PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways
☆63Mar 18, 2024Updated 2 years ago
Alternatives and similar repositories for pathway-mapper
Users that are interested in pathway-mapper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Codes to regenerate figures for mutagen paper☆12Apr 8, 2021Updated 5 years ago
- Identifying recurrent mutations in cancer☆39Mar 4, 2021Updated 5 years ago
- ☆10Jan 21, 2023Updated 3 years ago
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Aug 19, 2020Updated 5 years ago
- Dichotomous of innate immune landscape☆17Aug 31, 2019Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- simpler single cell RNAseq data Visualization☆12Feb 28, 2025Updated last year
- ☆12Sep 4, 2019Updated 6 years ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆36Jan 28, 2022Updated 4 years ago
- GEO RNA-seq Experiments Processing Pipeline☆22Oct 25, 2019Updated 6 years ago
- MuSiCa - Mutational Signatures in Cancer☆23Dec 23, 2023Updated 2 years ago
- Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R☆12Dec 6, 2021Updated 4 years ago
- ☆17Jan 9, 2023Updated 3 years ago
- Published at Bioinformatics☆12Jul 4, 2024Updated last year
- An Interactive Consensus Clustering framework for Cross-platform data analysis☆14Jan 28, 2022Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- R package for integrating and comparing multiple single cell genomic datasets☆12Dec 27, 2020Updated 5 years ago
- BioBombe: Sequentially compressed gene expression features enhances biological signatures☆65Jul 1, 2024Updated last year
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆73May 23, 2024Updated 2 years ago
- RNA-Seq Mutation Detection☆28Mar 3, 2026Updated 2 months ago
- A Framework to call Structural Variants from NGS based datasets☆22Jan 22, 2018Updated 8 years ago
- Docker image of JBrowse Genome Browser☆15Apr 12, 2021Updated 5 years ago
- DriverPower☆26Jan 18, 2025Updated last year
- Explore the cancer relevance of your gene list☆54Dec 17, 2025Updated 5 months ago
- Code to reproduce TNBC analysis and figures☆24Jun 13, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Install GISTIC2 by one line code; GISTIC2 docker image☆41May 5, 2023Updated 3 years ago
- An automated post sequencing data processing pipeline for Illumina HiSeq☆14Aug 28, 2025Updated 9 months ago
- Dockstore implementation of CGP core WGS analysis☆30Jun 8, 2020Updated 5 years ago
- DISCOVER co-occurrence and mutual exclusivity analysis for cancer genomics data☆32May 1, 2025Updated last year
- identifying mutational significance in cancer genomes☆62Nov 16, 2022Updated 3 years ago
- CORNAS is a fast method for reliable DEG calls in unreplicated conditions.☆13Jul 14, 2019Updated 6 years ago
- Adapted from the GATK best practice guide to preprocess whole exome sequencing (WES) data☆11Sep 4, 2019Updated 6 years ago
- cBioPortal for Cancer Genomics☆1,012Updated this week
- A framework to infer mutational signatures in cancer over time☆58Jul 9, 2019Updated 6 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- deconstructSigs☆144Apr 24, 2023Updated 3 years ago
- Public repository for building and analyzing protein complex maps☆12Dec 6, 2016Updated 9 years ago
- ☆46Nov 18, 2019Updated 6 years ago
- GSCALite: Gene set for cancer analysis☆23May 25, 2022Updated 4 years ago
- React Frontend of cBioPortal☆145Updated this week
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆53Apr 8, 2022Updated 4 years ago
- ☆12Apr 26, 2020Updated 6 years ago