iVis-at-Bilkent / pathway-mapperLinks
PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways
☆63Updated last year
Alternatives and similar repositories for pathway-mapper
Users that are interested in pathway-mapper are comparing it to the libraries listed below
Sorting:
- MetaSRA: normalized sample-specific metadata for the Sequence Read Archive☆45Updated 2 months ago
- ☆20Updated 8 years ago
- Identifying recurrent mutations in cancer☆39Updated 4 years ago
- Decrypting somatic mutation patterns to reveal the evolution of cancer☆56Updated 4 years ago
- ☆44Updated 7 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- Detect somatic variants from tumor and normal WGS/WXS data☆19Updated this week
- 3D hotspot mutation proximity analysis tool☆52Updated 2 years ago
- ARCHS4 RNA-seq processing scripts and web server pages.☆62Updated 5 years ago
- JAMM Peak Finder for Sequencing Datasets☆30Updated 5 years ago
- Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data☆87Updated 5 years ago
- A continually expanding collection of RNA-seq tools☆53Updated 3 months ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆52Updated 6 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆30Updated 4 years ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆50Updated 6 years ago
- Gene Set Enrichment Analysis (GSEA) is a computational method that determines whether an a priori defined set of genes shows statisticall…☆38Updated 10 months ago
- ⚙️ A lightweight immune repertoire browser☆27Updated 6 years ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆29Updated 6 years ago
- UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq pipeline☆42Updated 5 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- The EnrichmentMap Cytoscape App allows you to visualize the results of gene-set enrichment as a network.☆35Updated last year
- Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests☆50Updated last year
- Cancer Genome Project Insertion/Deletion detection pipeline based around Pindel☆28Updated 8 months ago
- Data visualization and analysis framework focused on phenotype-molecular data integration at cohort level.☆47Updated this week
- pTuneos: prioritizing Tumor neoantigen from next-generation sequencing data☆38Updated 4 years ago
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 3 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)☆30Updated 10 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Updated 3 years ago
- Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.☆70Updated 4 years ago