ShixiangWang / install_GISTIC
Install GISTIC2 by one line code; GISTIC2 docker image
☆40Updated last year
Alternatives and similar repositories for install_GISTIC:
Users that are interested in install_GISTIC are comparing it to the libraries listed below
- Hypoxia associated molecular feature analysis☆35Updated 5 years ago
- Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022☆36Updated 11 months ago
- ☆29Updated 3 years ago
- ☆63Updated 2 years ago
- Mollecular Functional Portraits☆36Updated 9 months ago
- A pipeline to process m6A-seq data and down stream analysis.☆43Updated 4 years ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆48Updated 2 years ago
- R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE☆90Updated 3 months ago
- ☆10Updated 7 years ago
- A R package for advanced single cell data viz☆62Updated last year
- An R package to time somatic mutations☆60Updated 4 years ago
- Analysis pipeline for ATAC-seq Data☆60Updated 3 years ago
- ☆31Updated 5 years ago
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆72Updated 6 years ago
- Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinoma☆76Updated 2 months ago
- ☆76Updated last year
- R-code used for single-cell RNA-Seq analysis of kidney data.☆17Updated 5 years ago
- ☆98Updated last year
- GLASS consortium☆38Updated 4 years ago
- Scripts for paper entitled "Limits in the detection of m6A changes using MeRIP/m6A-seq☆47Updated 5 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆76Updated 2 years ago
- Code repository for single cell RNA-seq☆33Updated 4 years ago
- This repository holds the scripts used to analyze the data presented in "A multi-omic single-cell landscape of human gynecologic malignan…☆35Updated last year
- Publication Page for Satpathy*, Granja* et al 2019☆92Updated 4 years ago
- ChIP-seq analysis notes from Tommy Tang☆19Updated 8 years ago
- ☆41Updated 3 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆47Updated last year
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- collected resource for scRNA-seq analysis☆57Updated last year
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago