fls-bioinformatics-core / GFFUtilsLinks
Python module and utility programs for working with GFF files
☆32Updated 4 years ago
Alternatives and similar repositories for GFFUtils
Users that are interested in GFFUtils are comparing it to the libraries listed below
Sorting:
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 4 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Updated last month
- ☆30Updated 4 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆33Updated 3 years ago
- A python package and a set of shell commands to handle GTF files☆49Updated last year
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆36Updated 2 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 7 years ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- Long read to rMATS☆32Updated 2 years ago
- A comprehensive toolkit for mutational signature analysis☆41Updated last year
- chia pet analysis software☆25Updated 6 years ago
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets☆34Updated 6 months ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Interactive multiscale visualization for structural variation in human genomes☆70Updated last week
- Define regions in the genome☆33Updated 3 years ago
- ☆21Updated last year
- tspex: tissue-specificity calculator☆33Updated 2 years ago
- chimeraviz is an R package that automates the creation of chimeric RNA visualizations.☆38Updated last year
- viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data☆28Updated last year
- ☆23Updated 4 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated last year
- ☆50Updated 4 years ago
- Ultra-fast 5' and 3' demultiplexer☆28Updated last year
- ☆33Updated 3 years ago
- Comprehensive analysis of small RNA sequencing data☆33Updated 5 months ago