fls-bioinformatics-core / GFFUtilsLinks
Python module and utility programs for working with GFF files
☆32Updated 4 years ago
Alternatives and similar repositories for GFFUtils
Users that are interested in GFFUtils are comparing it to the libraries listed below
Sorting:
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated 2 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- ☆23Updated 4 years ago
- ☆21Updated last year
- Genomic data interpretation and visualization Workshop☆20Updated last week
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated 11 months ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆25Updated last month
- Gene Fusion Visualiser☆51Updated 2 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- ☆22Updated 5 months ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆47Updated this week
- Genomic Association Tester☆31Updated 2 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated last year
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- RNAseq pipeline based on snakemake☆26Updated 2 years ago
- Rapid analysis and visualisation for bulk RNA-seq, psuedo-bulk RNA-seq, GeoMx and Proteomic datasets.☆28Updated 8 months ago
- a set of NGS pipelines☆24Updated last week
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 4 years ago
- Codes and Data for FFPEsig manuscript☆17Updated last year
- A python package and a set of shell commands to handle GTF files☆48Updated 11 months ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆45Updated 2 months ago
- lncRNA-screen☆25Updated 8 years ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆33Updated 3 years ago
- RNA editing quantification in deep transcriptome data☆15Updated 2 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆31Updated 3 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- for visual evaluation of read support for structural variation☆54Updated last year