mhorlbeck / ScreenProcessingLinks
☆65Updated 2 years ago
Alternatives and similar repositories for ScreenProcessing
Users that are interested in ScreenProcessing are comparing it to the libraries listed below
Sorting:
- R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…☆24Updated 2 years ago
- ☆62Updated 5 years ago
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆84Updated 2 years ago
- Immunology-related bioinformatics data and tools☆73Updated last year
- Using TCR and expression for sequence embedding☆58Updated 3 weeks ago
- R package to access DoRothEA's regulons☆150Updated last year
- Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent gen…☆32Updated 4 years ago
- Code related to the Celligner manuscript☆46Updated 4 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated 4 months ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- R package for the analysis of single-cell immune repertoires☆43Updated 7 months ago
- Clonotype Neighbor Graph Analysis☆90Updated 3 weeks ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆95Updated 6 years ago
- ☆69Updated 7 years ago
- published papers with a lot of data☆74Updated 5 months ago
- A docker image for single-cell analysis☆89Updated 7 months ago
- ☆70Updated last year
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆97Updated 2 years ago
- Tools for single-cell data processing☆126Updated last year
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆42Updated 3 weeks ago
- ☆86Updated 2 weeks ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆118Updated last week
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆74Updated 2 years ago
- CellNet: network biology applied to stem cell engineering☆54Updated 2 years ago
- epigenome analysis to rank transcription factors☆31Updated 2 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- ☆61Updated 4 years ago
- Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVI…☆49Updated 3 years ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 7 years ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆118Updated 3 years ago