☆71Aug 19, 2023Updated 2 years ago
Alternatives and similar repositories for ScreenProcessing
Users that are interested in ScreenProcessing are comparing it to the libraries listed below
Sorting:
- ☆38Oct 25, 2018Updated 7 years ago
- Code associated with MIX-seq manuscript☆15Aug 26, 2020Updated 5 years ago
- ☆12Sep 8, 2020Updated 5 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Jan 25, 2022Updated 4 years ago
- West Coast Dream Team Whole Genome Bisulfite Sequencing☆15Nov 7, 2025Updated 3 months ago
- ☆11Aug 3, 2018Updated 7 years ago
- Analysis code for the TAP-seq manuscript.☆11Jun 25, 2021Updated 4 years ago
- ☆10Mar 11, 2025Updated 11 months ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- Data analysis scripts for Datlinger et. al, 2017 (doi:10.1038/nmeth.4177)☆32Feb 22, 2018Updated 8 years ago
- A Perl/R pipeline for plotting metagenes☆37Sep 17, 2021Updated 4 years ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆30Apr 10, 2023Updated 2 years ago
- Extracts fastq reads for specified barcode(s) from one or multiple FASTQ files☆13Jan 31, 2016Updated 10 years ago
- BioCarta pathway images☆11Jan 30, 2026Updated last month
- ☆12Dec 7, 2020Updated 5 years ago
- Paired-seq☆15Jul 17, 2024Updated last year
- The official repository for the deepSNV bioconductor packages. Branch master tracks the official Bioconductor development branch.☆17Jun 1, 2022Updated 3 years ago
- Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"☆66Jun 6, 2020Updated 5 years ago
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆14Apr 12, 2023Updated 2 years ago
- TRUST4 manuscript evaluation☆16Jul 8, 2022Updated 3 years ago
- ☆17Apr 9, 2021Updated 4 years ago
- A toolset for handling sequencing data with unique molecular identifiers (UMIs)☆17Jul 13, 2018Updated 7 years ago
- Peak calling for 4C data☆13May 4, 2018Updated 7 years ago
- ☆19Apr 14, 2024Updated last year
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Oct 11, 2019Updated 6 years ago
- ☆15Jun 2, 2022Updated 3 years ago
- ☆47Apr 18, 2020Updated 5 years ago
- Bead-based single-cell atac processing☆33Nov 13, 2021Updated 4 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Apr 16, 2020Updated 5 years ago
- Plot CNV data with a genome viewer in R☆15Apr 5, 2017Updated 8 years ago
- Improved Ribo-seq enables identification of cryptic translation events☆17Feb 13, 2018Updated 8 years ago
- Builds a PEP from SRA or GEO accessions☆55Jan 22, 2026Updated last month
- Repository for supplemental material of manuscripts☆19Jun 30, 2021Updated 4 years ago
- Gene Set Enrichment Analysis (GSEA) is a computational method that determines whether an a priori defined set of genes shows statisticall…☆38Mar 10, 2025Updated 11 months ago
- Unsupervised correction of gene independent cell responses to CRISPR-cas9☆54Apr 28, 2023Updated 2 years ago
- A single-cell transcriptomic analysis of endometriosis, endometriomas, eutopic endometrial samples and uninvolved ovary tissues highlight…☆18Jan 12, 2023Updated 3 years ago
- toolkit for analyzing genome editing experiments☆21Updated this week
- ☆10May 31, 2022Updated 3 years ago
- Code to go along with https://doi.org/10.1016/j.cell.2022.09.010☆21Mar 16, 2022Updated 3 years ago