limx54 / KGGseqLinks
☆15Updated 4 years ago
Alternatives and similar repositories for KGGseq
Users that are interested in KGGseq are comparing it to the libraries listed below
Sorting:
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- A toolset for handling sequencing data with unique molecular identifiers (UMIs)☆15Updated 7 years ago
- ☆22Updated 2 months ago
- Tools to process LIANTI sequence data☆23Updated 6 years ago
- A/B compartments for 12 cancer types estimated from TCGA methylation data☆20Updated 8 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 5 years ago
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆33Updated 3 years ago
- ☆25Updated 7 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- CNV detection tool for targeted NGS panel data☆16Updated 3 years ago
- Automated human exome/genome variants detection from FASTQ files☆23Updated 4 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Updated last year
- Example datasets for CNVkit (http://github.com/etal/cnvkit)☆23Updated 7 years ago
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Updated 5 years ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆18Updated 6 years ago
- CAVA (Clinical Annotation of VAriants)☆14Updated 7 years ago
- Personal diploid genome creation and coordinate conversion☆30Updated 6 months ago
- BitMapperBS: a fast and accurate read aligner for whole-genome bisulfite sequencing☆31Updated 6 years ago
- Multi-sample cancer phylogeny reconstruction☆35Updated 8 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆19Updated last week
- ☆22Updated last month
- ☆18Updated 5 years ago
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆41Updated 6 years ago
- Somatic point mutation caller☆17Updated 9 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- CADD-SV – a framework to score the effect of structural variants☆15Updated 7 months ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆29Updated 4 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆23Updated 2 years ago
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Updated 5 years ago