limx54 / KGGseqLinks
☆15Updated 4 years ago
Alternatives and similar repositories for KGGseq
Users that are interested in KGGseq are comparing it to the libraries listed below
Sorting:
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- CAVA (Clinical Annotation of VAriants)☆14Updated 7 years ago
- ☆23Updated 6 months ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 6 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 5 years ago
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆34Updated 3 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…☆19Updated 6 years ago
- Example datasets for CNVkit (http://github.com/etal/cnvkit)☆23Updated 7 years ago
- ☆23Updated 2 weeks ago
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Updated 5 years ago
- DriverPower☆26Updated last year
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Updated 3 weeks ago
- Automated human exome/genome variants detection from FASTQ files☆23Updated 4 years ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆18Updated 6 years ago
- ☆25Updated 7 years ago
- A set of tools to annotate VCF files with expression and readcount data☆30Updated 10 months ago
- Interpretable prioritization of splice variants in diagnostic next-generation sequencing☆18Updated last year
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Updated 7 years ago
- Personal diploid genome creation and coordinate conversion☆30Updated 10 months ago
- A curated list of awesome clonality and tumor heterogeneity resources☆15Updated 6 years ago
- ☆17Updated last year
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Updated 2 years ago
- CNV detection tool for targeted NGS panel data☆16Updated 3 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Updated 6 years ago
- Framework to benchmark algorithms when detecting germline copy number variations (CNVs) from NGS data☆14Updated last year
- Filter and prioritize fusion calls☆20Updated last week
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 7 years ago