limx54 / KGGseqLinks
☆15Updated 5 years ago
Alternatives and similar repositories for KGGseq
Users that are interested in KGGseq are comparing it to the libraries listed below
Sorting:
- CAVA (Clinical Annotation of VAriants)☆14Updated 7 years ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 6 years ago
- ☆23Updated 3 weeks ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Automated human exome/genome variants detection from FASTQ files☆23Updated 4 years ago
- Example datasets for CNVkit (http://github.com/etal/cnvkit)☆23Updated 7 years ago
- ☆23Updated 6 months ago
- ☆25Updated 7 years ago
- Multi-sample cancer phylogeny reconstruction☆36Updated 8 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆40Updated 2 years ago
- A curated list of awesome clonality and tumor heterogeneity resources☆15Updated 6 years ago
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆34Updated 3 years ago
- CNV detection tool for targeted NGS panel data☆16Updated 3 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 5 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆20Updated 3 years ago
- ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…☆19Updated 6 years ago
- ☆18Updated 5 years ago
- Structural Variation breakpoint discovery via adaptive learning☆16Updated 2 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 8 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 2 years ago
- Personal diploid genome creation and coordinate conversion☆30Updated 10 months ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Updated 4 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- Somatic point mutation caller☆17Updated 9 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆30Updated 4 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Updated last month
- Tools to process LIANTI sequence data☆23Updated 6 years ago
- MUltiScale enrIchment Calling for ChIP-Seq Datasets☆23Updated 6 years ago