A toolkit for optimal workflow recommendation for proteomics data differential expression analysis
☆20Oct 10, 2024Updated last year
Alternatives and similar repositories for OpDEA
Users that are interested in OpDEA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆13Jan 27, 2023Updated 3 years ago
- A tissue-specific single-cell biological age model☆13Jul 26, 2023Updated 2 years ago
- Python package to predict enhancer-gene interactions supervised on CRISPRi data☆15Nov 21, 2023Updated 2 years ago
- ☆17Nov 5, 2024Updated last year
- Differential Expression Analysis tool box R lang package for omics data☆47Mar 19, 2026Updated last week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Homologizer: phasing gene copies into polyploid subgenomes☆11Feb 3, 2026Updated last month
- Cross-modal generation of molecules from gene expression inputs. (Briefings in Bioinformatics 2024)☆11May 3, 2025Updated 10 months ago
- Documentation for the limpa Bioconductor package, which implements quantification and differential analysis of mass-spectrometry proteomi…☆20Mar 20, 2026Updated last week
- Tools for normalization, evaluation of outliers, technical biases and batch effects and differential expression analysis.☆26Mar 3, 2026Updated 3 weeks ago
- [PR 2025] Code for UMPIRE☆13Mar 10, 2025Updated last year
- Tools for Batch Effects Diagnostics and Correction☆17Apr 25, 2025Updated 11 months ago
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆10May 12, 2025Updated 10 months ago
- an efficient data integration method for multiple spatial transcriptomics data with non- cluster-relevant effects such as the complex batc…☆12Dec 15, 2025Updated 3 months ago
- ☆13Jan 22, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- qpx (Quantitative Proteomics eXchange) format (aka quantms.io) a format to capture a full proteomics experiment☆16Updated this week
- A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets☆12Feb 7, 2025Updated last year
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆12Jun 16, 2021Updated 4 years ago
- ☆19Jan 20, 2026Updated 2 months ago
- Learning meaningful representations of genes☆21Jul 7, 2025Updated 8 months ago
- Unified access to several second-generation deconvolution methods☆96Jan 5, 2026Updated 2 months ago
- [ICME 2024] Code for H2GT☆17Oct 29, 2024Updated last year
- Analysis tools for PhIP-seq experiments☆12Jan 24, 2022Updated 4 years ago
- Python client for PRIDE Archive Rest API.☆37Feb 6, 2026Updated last month
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆28May 16, 2024Updated last year
- A package to annotate protein sequences☆62Feb 23, 2025Updated last year
- Absolute quantification package based on quantms.io☆16Sep 25, 2025Updated 6 months ago
- Interactive visualisation of CellphoneDB results☆12Jan 15, 2025Updated last year
- ☆19Nov 7, 2024Updated last year
- Human Endometrial Cell Atlas (HECA). An integrated single-cell reference atlas of the human endometrium.☆31Jun 19, 2024Updated last year
- Scripts involved in our workflow for detecting CNVs from WGS data using read depth-based methods☆47Sep 20, 2022Updated 3 years ago
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆61Mar 19, 2026Updated last week
- PTa Analysis TOolkit☆15Mar 2, 2026Updated 3 weeks ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Implementation of the MSqRob analysis of differentially expressed proteins using the Features infrastructure☆13Dec 17, 2025Updated 3 months ago
- Bayesian enrichment estimation in R☆11Nov 15, 2025Updated 4 months ago
- ☆21Mar 2, 2026Updated 3 weeks ago
- GIANT (Gene-based data Integration and ANalysis Technique) is a method for large-scale joint analyses of atlas-level single cell data.☆14Jun 13, 2023Updated 2 years ago
- Tool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and …☆14Feb 26, 2026Updated last month
- ☆10Jun 13, 2020Updated 5 years ago
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆21Mar 20, 2026Updated last week