PennHui2016 / OpDEAView external linksLinks
A toolkit for optimal workflow recommendation for proteomics data differential expression analysis
☆19Oct 10, 2024Updated last year
Alternatives and similar repositories for OpDEA
Users that are interested in OpDEA are comparing it to the libraries listed below
Sorting:
- Differential Expression Analysis tool box R lang package for omics data☆47Dec 19, 2025Updated last month
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆12Jan 27, 2023Updated 3 years ago
- ☆16Nov 5, 2024Updated last year
- an efficient data integration method for multiple spatial transcriptomics data with non- cluster-relevant effects such as the complex batc…☆12Dec 15, 2025Updated last month
- A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets☆12Feb 7, 2025Updated last year
- qpx (Quantitative Proteomics eXchange) format (aka quantms.io) a format to capture a full proteomics experiment☆15Updated this week
- Implementation of the MSqRob analysis of differentially expressed proteins using the Features infrastructure☆13Dec 17, 2025Updated last month
- Analysis tools for PhIP-seq experiments☆12Jan 24, 2022Updated 4 years ago
- GIANT (Gene-based data Integration and ANalysis Technique) is a method for large-scale joint analyses of atlas-level single cell data.☆14Jun 13, 2023Updated 2 years ago
- Bayesian enrichment estimation in R☆11Nov 15, 2025Updated 3 months ago
- A tissue-specific single-cell biological age model☆13Jul 26, 2023Updated 2 years ago
- ☆18Nov 7, 2024Updated last year
- Python package to predict enhancer-gene interactions supervised on CRISPRi data☆15Nov 21, 2023Updated 2 years ago
- Documentation for the limpa Bioconductor package, which implements quantification and differential analysis of mass-spectrometry proteomi…☆20Feb 8, 2026Updated last week
- Absolute quantification package based on quantms.io☆16Sep 25, 2025Updated 4 months ago
- Tools for Batch Effects Diagnostics and Correction☆17Apr 25, 2025Updated 9 months ago
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆21Updated this week
- Learning meaningful representations of genes☆21Jul 7, 2025Updated 7 months ago
- Unified access to several second-generation deconvolution methods☆91Jan 5, 2026Updated last month
- ☆21Oct 9, 2023Updated 2 years ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆53Dec 1, 2025Updated 2 months ago
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆60Jan 7, 2026Updated last month
- Human Endometrial Cell Atlas (HECA). An integrated single-cell reference atlas of the human endometrium.☆30Jun 19, 2024Updated last year
- Protein Differential Abundance for Label-Free Mass Spectrometry https://const-ae.github.io/proDA/☆22Oct 30, 2023Updated 2 years ago
- The "copynumber" R package with support for hg38☆20Apr 10, 2023Updated 2 years ago
- model-based understanding of single-cell CRISPR screening☆27Dec 13, 2024Updated last year
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆28May 16, 2024Updated last year
- Peptide library design☆23Sep 8, 2020Updated 5 years ago
- ☆24Aug 24, 2025Updated 5 months ago
- Tools for normalization, evaluation of outliers, technical biases and batch effects and differential expression analysis.☆26Feb 3, 2026Updated last week
- ☆26Dec 16, 2025Updated last month
- Cellular dynamics across aged human brains uncover a multicellular cascade leading to Alzheimer’s disease☆65Dec 13, 2024Updated last year
- DEqMS is a tool for quantitative proteomic analysis☆24Apr 16, 2025Updated 9 months ago
- Python client for PRIDE Archive Rest API.☆36Feb 6, 2026Updated last week
- ☆27Jun 5, 2025Updated 8 months ago
- A package to annotate protein sequences☆61Feb 23, 2025Updated 11 months ago
- Single Cell Analysis Pipelines☆116Feb 4, 2026Updated last week
- Python implementation of the Slingshot pseudotime algorithm☆69Oct 28, 2025Updated 3 months ago
- metaX: a flexible and comprehensive software for processing omics data.☆26Jun 16, 2023Updated 2 years ago