Alternatives and similar repositories for OpDEA

Users that are interested in OpDEA are comparing it to the libraries listed below

• bm2-lab / MUSIC
  model-based understanding of single-cell CRISPR screening
  ☆26Updated last year
• getzlab / CPTAC_PanCan_PTM_2023
  ☆17Updated 2 years ago
• LukszaLab / NeoantigenEditing
  ☆23Updated 3 years ago
• data2intelligence / CytoSig_prediction
  Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts
  ☆14Updated 2 years ago
• broadinstitute / Celligner_ms
  Code related to the Celligner manuscript
  ☆46Updated 5 years ago
• Teichlab / cell2tcr
  Inference of TCR motifs
  ☆32Updated 7 months ago
• XSLiuLab / Seq2Neo
  Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction
  ☆22Updated 2 years ago
• angelettilab / scMouseBcellFlu
  ☆18Updated 3 years ago
• broadinstitute / single_cell_classification
  Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles
  ☆30Updated 5 years ago
• dzhakparov / GeneSelectR
  ☆23Updated last year
• mildpiggy / DEP2
  An r package for proteomics data Analysis, developed from DEP.
  ☆34Updated 9 months ago
• emmijokinen / TCRconv
  TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…
  ☆26Updated 3 years ago
• Core-Bioinformatics / ClustAssess
  Tools for assessing clustering robustness
  ☆28Updated last month
• dakwok / SSNIP
  The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…
  ☆20Updated 9 months ago
• MiraldiLab / maxATAC
  Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks
  ☆30Updated last month
• saezlab / cosmosR
  COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…
  ☆64Updated last month
• olapuentesantana / easier
  R package to use EaSIeR to predict anti-tumor immune response from bulk RNA-seq
  ☆15Updated last month
• Xinglab / IRIS
  IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening
  ☆28Updated last year
• kenichi-shimada / shinyDepMap
  A shiny-based web tool for interactive analysis of DepMap data
  ☆24Updated 4 years ago
• bzhanglab / OmicsEV
  A tool for large scale omics datasets evaluation
  ☆23Updated 2 years ago
• GfellerLab / PRIME
  PRedictor of IMmunogenic Epitopes
  ☆25Updated 3 months ago
• olapuentesantana / easier_manuscript
  ☆16Updated 4 years ago
• tianshilu / QBRC-Neoantigen-Pipeline
  QBRC Neoantigen calling pipeline with CSiN calculation embedded
  ☆25Updated 3 years ago
• nf-core / scflow
  Please consider using/contributing to https://github.com/nf-core/scdownstream
  ☆26Updated last year
• YeoLab / rbp-maps
  splicing and feature maps for RBPs
  ☆25Updated 3 years ago
• cantinilab / HuMMuS
  Molecular interactions inference from single-cell multi-omics data
  ☆30Updated this week
• SpielmannLab / STIGMA
  ☆10Updated last month
• umccr / neoantigens
  🏺 Exploring novel tumor epitope identification
  ☆37Updated 5 years ago
• bayesrx / SpaceX
  SpaceX: Gene Co-expression Network Estimation for Spatial Transcriptomics
  ☆20Updated 2 years ago
• kris-nader / scTherapy
  Identification of clone-specific and cancer-selective multi-targeting therapeutic options based on single-cell transcriptomic profiles of…
  ☆18Updated 10 months ago