A toolkit for optimal workflow recommendation for proteomics data differential expression analysis
☆20Oct 10, 2024Updated last year
Alternatives and similar repositories for OpDEA
Users that are interested in OpDEA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆15Jan 27, 2023Updated 3 years ago
- A tissue-specific single-cell biological age model☆14Jul 26, 2023Updated 3 years ago
- Python package to predict enhancer-gene interactions supervised on CRISPRi data☆16Nov 21, 2023Updated 2 years ago
- Differential Expression Analysis tool box R lang package for omics data☆46Aug 11, 2026Updated 3 weeks ago
- Homologizer: phasing gene copies into polyploid subgenomes☆13Feb 3, 2026Updated 7 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Tools for Batch Effects Diagnostics and Correction☆17Apr 25, 2025Updated last year
- Cross-modal generation of molecules from gene expression inputs. (Briefings in Bioinformatics 2024)☆11May 3, 2025Updated last year
- Tools for normalization, evaluation of outliers, technical biases and batch effects and differential expression analysis.☆26Apr 22, 2026Updated 4 months ago
- Analysis tools for PhIP-seq experiments☆13Jan 24, 2022Updated 4 years ago
- an efficient data integration method for multiple spatial transcriptomics data with non- cluster-relevant effects such as the complex batc…☆16Dec 15, 2025Updated 8 months ago
- A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets☆13Feb 7, 2025Updated last year
- [PR 2025] Code for UMPIRE☆14Mar 10, 2025Updated last year
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆12May 12, 2025Updated last year
- A Toolkit for Single Cell Spatiotemporal Dynamical Generative Modeling☆18Jun 30, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆12Jun 16, 2021Updated 5 years ago
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Mar 1, 2022Updated 4 years ago
- A package to annotate protein sequences☆63Feb 23, 2025Updated last year
- Bayesian enrichment estimation in R☆11Nov 15, 2025Updated 9 months ago
- [ICME 2024] Code for H2GT☆17Oct 29, 2024Updated last year
- PTa Analysis TOolkit☆20Jun 9, 2026Updated 2 months ago
- ☆18Nov 5, 2024Updated last year
- Absolute quantification package based on quantms.io☆16Sep 25, 2025Updated 11 months ago
- ☆19Jul 21, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Documentation for the limpa Bioconductor package, which implements quantification and differential analysis of mass-spectrometry proteomi…☆23Mar 25, 2026Updated 5 months ago
- Interactive visualisation of CellphoneDB results☆13Jan 15, 2025Updated last year
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆30May 16, 2024Updated 2 years ago
- ☆21Mar 2, 2026Updated 6 months ago
- Learning meaningful representations of genes☆21Jul 7, 2025Updated last year
- do multiple nucleotide sequence alignment fast and accurately☆18Dec 1, 2022Updated 3 years ago
- GIANT (Gene-based data Integration and ANalysis Technique) is a method for large-scale joint analyses of atlas-level single cell data.☆14Jun 13, 2023Updated 3 years ago
- My own tools code for NGS data analysis (Next Generation Sequencing)☆32Aug 11, 2019Updated 7 years ago
- ☆10Jun 13, 2020Updated 6 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Code and software used to design de novo protein nanomachines. Supplementary material for "Computational design of nanoscale rotational m…☆10Mar 19, 2022Updated 4 years ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated last year
- Histology Analysis Pipeline.PY☆30Jul 1, 2026Updated 2 months ago
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆22Updated this week
- Implementation of the MSqRob analysis of differentially expressed proteins using the Features infrastructure☆15Jul 1, 2026Updated 2 months ago
- Navigation links (and brief descriptions) to my repositories.☆14Nov 25, 2025Updated 9 months ago
- Tool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and …☆15Jun 18, 2026Updated 2 months ago