Alternatives and similar repositories for OpDEA

Users that are interested in OpDEA are comparing it to the libraries listed below

• XSLiuLab / Seq2Neo
  Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction
  ☆21Updated 2 years ago
• broadinstitute / Celligner_ms
  Code related to the Celligner manuscript
  ☆46Updated 4 years ago
• Teichlab / cell2tcr
  Inference of TCR motifs
  ☆32Updated 3 weeks ago
• dzhakparov / GeneSelectR
  ☆19Updated last year
• dakwok / SSNIP
  The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…
  ☆18Updated 3 months ago
• aertslab / GENIE3
  GENIE3 (GEne Network Inference with Ensemble of trees) R-package
  ☆32Updated 3 years ago
• saezlab / cosmosR
  COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…
  ☆61Updated last week
• angelettilab / scMouseBcellFlu
  ☆18Updated 3 years ago
• tianshilu / QBRC-Neoantigen-Pipeline
  QBRC Neoantigen calling pipeline with CSiN calculation embedded
  ☆24Updated 3 years ago
• YeoLab / rbp-maps
  splicing and feature maps for RBPs
  ☆25Updated 3 years ago
• bm2-lab / MUSIC
  model-based understanding of single-cell CRISPR screening
  ☆24Updated 7 months ago
• zpliulab / scGENA
  single cell Gene co-Expression Network Analysis
  ☆9Updated 2 years ago
• mildpiggy / DEP2
  An r package for proteomics data Analysis, developed from DEP.
  ☆30Updated 3 months ago
• Biobix / proteoformer
  Integration ribosome profiling - mass spectrometry
  ☆15Updated last week
• const-ae / proDA
  Protein Differential Abundance for Label-Free Mass Spectrometry https://const-ae.github.io/proDA/
  ☆20Updated last year
• olapuentesantana / easier_manuscript
  ☆15Updated 3 years ago
• interactivereport / Quickomics
  Quickomics: exploring omics data in an intuitive, interactive and informative manner. Bioinformatics. 2021 Apr 26:btab255.
  ☆41Updated 2 months ago
• Teichlab / celltypist_wiki
  Materials and scripts for building cell type encyclopedia table
  ☆19Updated 6 months ago
• antigenomics / vdjmatch
  ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities
  ☆38Updated 6 years ago
• data2intelligence / CytoSig_prediction
  Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts
  ☆13Updated 2 years ago
• bzhanglab / OmicsEV
  A tool for large scale omics datasets evaluation
  ☆25Updated 2 years ago
• MiraldiLab / maxATAC
  Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks
  ☆28Updated 3 months ago
• emmijokinen / TCRconv
  TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…
  ☆25Updated 2 years ago
• interactivereport / xOmicsShiny
  R Shiny application for cross omics data analysis. In revision with Bioinformatics Adv.
  ☆31Updated last month
• BorchLab / Ibex
  Using BCR and expression for sequence embedding
  ☆23Updated last month
• zhejilab / RibORF
  Identifying genome-wide translated open reading frames using ribosome profiling
  ☆23Updated 2 years ago
• marrlab / CAR_T_TargetIdentification
  Computational identification of targets for CAR-T cell therapy in AML
  ☆16Updated 2 years ago
• GfellerLab / PRIME
  PRedictor of IMmunogenic Epitopes
  ☆23Updated last month
• LukszaLab / NeoantigenEditing
  ☆16Updated 3 years ago
• andrewrech / antigen.garnish
  ☆48Updated 3 years ago