boxiangliu / covseqLinks
CoV-Seq: COVID-19 Genomic Sequence Database and Visualization
☆15Updated 5 years ago
Alternatives and similar repositories for covseq
Users that are interested in covseq are comparing it to the libraries listed below
Sorting:
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆21Updated 2 years ago
- programs and scripts, mainly python, for analyses related to nucleic or protein sequences☆24Updated 2 months ago
- A package for designing activity-informed nucleic acid diagnostics for viruses.☆35Updated 2 years ago
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆35Updated last year
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆27Updated 2 years ago
- antimicrobial peptide prediction in R☆33Updated last year
- Plot multiple sequence alignment (MSA)☆16Updated last year
- Package that facilitates pulling database entries from KEGG via its REST API☆11Updated 2 years ago
- Simple Python program to perform codon optimization or heterology calculations.☆11Updated 4 years ago
- Comparison of Adaptive Immune Receptor Repertoires☆28Updated last year
- uorf4u is a bioinformatics tool for conserved upstream ORF annotation.☆13Updated 4 months ago
- Find common blocks and differences between DNA sequences☆42Updated 2 months ago
- Brief tutorial for using Snakemake to create and submit jobs on a HPC cluster.☆15Updated 3 years ago
- Fast, sensitive and accurate protein remote homology search on GPUs☆16Updated last year
- Metagenome analysis using the Kraken software suite☆36Updated 3 years ago
- MeShClust2: Application of alignment-free identity scores in clustering long DNA sequences☆15Updated 4 years ago
- 16S pipeline using qiime2 created with snakemake☆12Updated 3 weeks ago
- ☆14Updated 2 weeks ago
- PiGx SARS-CoV-2 wastewater sequencing pipeline☆18Updated 2 years ago
- R tool to analyse and integrate multiple -omics data☆15Updated 3 weeks ago
- Listing of GPU based bioinformatics software & sites & publications☆11Updated 4 years ago
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Updated 2 years ago
- Bayesian Markov Model motif discovery tool version 2 - An expectation maximization algorithm for the de novo discovery of enriched motifs…☆15Updated 4 years ago
- ☆19Updated 2 years ago
- RNA-seq, QC and differential analysis pipeline☆17Updated 2 months ago
- xGAP is an efficient, modular, extensible and fault-tolerant pipeline for massively parallelized genomic analysis/variant discovery from …☆11Updated 5 years ago
- ☆31Updated 4 years ago
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆25Updated 2 years ago
- Python bindings for the TaxonKit library☆43Updated 2 weeks ago
- A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers☆22Updated 6 years ago