boxiangliu / covseqLinks
CoV-Seq: COVID-19 Genomic Sequence Database and Visualization
☆15Updated 4 years ago
Alternatives and similar repositories for covseq
Users that are interested in covseq are comparing it to the libraries listed below
Sorting:
- Package that facilitates pulling database entries from KEGG via its REST API☆9Updated last year
- R tool to analyse and integrate multiple -omics data☆13Updated last month
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated 2 years ago
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆33Updated last year
- Brief tutorial for using Snakemake to create and submit jobs on a HPC cluster.☆14Updated 3 years ago
- Listing of GPU based bioinformatics software & sites & publications☆10Updated 3 years ago
- PiGx SARS-CoV-2 wastewater sequencing pipeline☆18Updated 2 years ago
- 16S pipeline using qiime2 created with snakemake☆11Updated 2 months ago
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆21Updated 2 years ago
- xGAP is an efficient, modular, extensible and fault-tolerant pipeline for massively parallelized genomic analysis/variant discovery from …☆11Updated 4 years ago
- A Quality Control filter and parser for NCBI BLAST XML results.☆17Updated 4 years ago
- Find common blocks and differences between DNA sequences☆42Updated 3 months ago
- A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets☆13Updated 5 months ago
- Metagenome analysis using the Kraken software suite☆32Updated 2 years ago
- antimicrobial peptide prediction in R☆32Updated 7 months ago
- Bayesian Markov Model motif discovery tool version 2 - An expectation maximization algorithm for the de novo discovery of enriched motifs…☆14Updated 4 years ago
- A package for designing activity-informed nucleic acid diagnostics for viruses.☆32Updated 2 years ago
- ☆11Updated 3 years ago
- k-mer similarity analysis pipeline☆21Updated last week
- FunctionaL Omics Processing platform☆13Updated 11 months ago
- Database of virus RdRP barcode sequences☆16Updated last year
- an ensemble usage of MAFFT-linsi --add on large datasets☆12Updated last year
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆11Updated 4 years ago
- Influenza genome analysis Nextflow workflow☆28Updated 3 months ago
- uorf4u is a bioinformatics tool for conserved upstream ORF annotation.☆13Updated last month
- Plot multiple sequence alignment (MSA)☆15Updated 9 months ago
- 🍶 Genome assembly with short sequence reads☆25Updated last year
- programs and scripts, mainly python, for analyses related to nucleic or protein sequences☆24Updated 3 months ago
- Python bindings for the TaxonKit library☆41Updated 3 weeks ago
- Open source short linear motif discovery and sequence analysis☆24Updated 9 months ago