Alternatives and similar repositories for covseq

Users that are interested in covseq are comparing it to the libraries listed below

• fomightez / sequencework
  programs and scripts, mainly python, for analyses related to nucleic or protein sequences
  ☆24Updated last week
• labomics / MetaLogo
  MetaLogo: a heterogeneity-aware sequence logo generator and aligner
  ☆21Updated 2 years ago
• vicruiser / 3Dmapper
  Map genetic variants and protein positions to protein interfaces in 3D
  ☆13Updated 2 years ago
• Immunotools / IgDetective
  a tool for annotation of immunoglobulin genes in genome assemblies
  ☆14Updated 4 months ago
• broadinstitute / adapt
  A package for designing activity-informed nucleic acid diagnostics for viruses.
  ☆35Updated 2 years ago
• uio-bmi / compairr
  Comparison of Adaptive Immune Receptor Repertoires
  ☆28Updated last year
• mourisl / MSAplot
  Plot multiple sequence alignment (MSA)
  ☆16Updated last year
• MoseleyBioinformaticsLab / kegg_pull
  Package that facilitates pulling database entries from KEGG via its REST API
  ☆11Updated 2 years ago
• bcgsc / ntEmbd
  Deep learning embedding for nucleotide sequences
  ☆19Updated 10 months ago
• mwang87 / GNPS_MASST
  ☆14Updated this week
• IxI-97 / BiomiX
  R tool to analyse and integrate multiple -omics data
  ☆15Updated last month
• IKIM-Essen / RiboSnake
  16S pipeline using qiime2 created with snakemake
  ☆12Updated last month
• matsengrp / phip-flow
  A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets
  ☆12Updated last year
• minmarg / comer2
  Fast, sensitive and accurate protein remote homology search on GPUs
  ☆16Updated last year
• GCA-VH-lab / uorf4u
  uorf4u is a bioinformatics tool for conserved upstream ORF annotation.
  ☆13Updated 4 months ago
• seqeralabs / nf-chai
  POC Nextflow pipeline to run the Chai-1, SOTA model for biomolecular structure prediction
  ☆11Updated last year
• tdseher / simple-codon-optimizer
  Simple Python program to perform codon optimization or heterology calculations.
  ☆11Updated 4 years ago
• thekaplanlab / msabrowser
  🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations
  ☆35Updated last year
• adigorla / xgap
  xGAP is an efficient, modular, extensible and fault-tolerant pipeline for massively parallelized genomic analysis/variant discovery from …
  ☆11Updated 5 years ago
• BioinformaticsToolsmith / MeShClust2
  MeShClust2: Application of alignment-free identity scores in clustering long DNA sequences
  ☆15Updated 4 years ago
• saezlab / flop
  FunctionaL Omics Processing platform
  ☆13Updated last year
• soedinglab / BaMMmotif2
  Bayesian Markov Model motif discovery tool version 2 - An expectation maximization algorithm for the de novo discovery of enriched motifs…
  ☆16Updated 5 years ago
• KevinKuchinski / ProbeTools
  Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa
  ☆25Updated 2 years ago
• slimsuite / SLiMSuite
  Open source short linear motif discovery and sequence analysis
  ☆25Updated last year
• BIMSBbioinfo / pigx_sars-cov-2
  PiGx SARS-CoV-2 wastewater sequencing pipeline
  ☆18Updated 2 years ago
• torkian / blast-QC
  A Quality Control filter and parser for NCBI BLAST XML results.
  ☆17Updated 5 years ago
• Edinburgh-Genome-Foundry / Geneblocks
  Find common blocks and differences between DNA sequences
  ☆42Updated 3 months ago
• NCBI-Codeathons / SWIGG
  A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers
  ☆22Updated 6 years ago
• SchlossLab / snakemake_cluster_tutorial
  Brief tutorial for using Snakemake to create and submit jobs on a HPC cluster.
  ☆15Updated 3 years ago
• kohanlee1995 / MHCfovea
  ☆14Updated 4 years ago