Alternatives and similar repositories for covseq

Users that are interested in covseq are comparing it to the libraries listed below

• cement-head / GPU-Bioinformatics
  Listing of GPU based bioinformatics software & sites & publications
  ☆10Updated 3 years ago
• thekaplanlab / msabrowser
  🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations
  ☆32Updated 11 months ago
• MoseleyBioinformaticsLab / kegg_pull
  Package that facilitates pulling database entries from KEGG via its REST API
  ☆9Updated last year
• BolognaBiocomp / deepsig
  DeepSig - Predictor of signal peptides in proteins based on deep learning
  ☆26Updated 2 years ago
• KHP-Informatics / DNAscanv2
  DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…
  ☆14Updated last year
• KoslickiLab / MetagenomicKG
  ☆14Updated 3 weeks ago
• Protein-Sequence-Annotation / PSALM
  Protein Sequence Annotation with Language Models
  ☆20Updated 6 months ago
• torkian / blast-QC
  A Quality Control filter and parser for NCBI BLAST XML results.
  ☆16Updated 4 years ago
• IKIM-Essen / RiboSnake
  16S pipeline using qiime2 created with snakemake
  ☆11Updated 3 weeks ago
• FischbachLab / ninjaMap
  Compute strain abundance in a defined microbial community
  ☆10Updated last year
• IxI-97 / BiomiX
  R tool to analyse and integrate multiple -omics data
  ☆12Updated 2 weeks ago
• VCCRI / dv-trio
  dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…
  ☆11Updated 4 years ago
• KevinKuchinski / ProbeTools
  Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa
  ☆24Updated last year
• matsengrp / phip-flow
  A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets
  ☆12Updated 3 months ago
• mourisl / MSAplot
  Plot multiple sequence alignment (MSA)
  ☆14Updated 7 months ago
• AnWiercze / NanopoReaTA
  Nanopore Real-Time Analysis Tool
  ☆15Updated 8 months ago
• bioforensics / pytaxonkit
  Python bindings for the TaxonKit library
  ☆39Updated this week
• mol-evol / panGPT
  A Generative Pre-Trained Transformer Package for Pangenomes
  ☆50Updated last year
• naznoosh / MSA
  ☆9Updated 4 years ago
• labomics / MetaLogo
  MetaLogo: a heterogeneity-aware sequence logo generator and aligner
  ☆20Updated 2 years ago
• Guannan-Wang / GOMCL
  GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions
  ☆20Updated last year
• joshidhaivat / QAlign
  ☆9Updated 3 years ago
• saezlab / flop
  FunctionaL Omics Processing platform
  ☆13Updated 9 months ago
• NBISweden / nbis-meta
  A snakemake workflow for metagenomic projects
  ☆14Updated 2 years ago
• moshi4 / GBKviz
  Easy-to-use web application for visualization and comparison of genomes in Genbank file
  ☆21Updated 2 years ago
• peng-ye / MetaPGN
  A pipeline for construction and graphical visualization of annotated pangenome networks.
  ☆17Updated 6 years ago
• martin-steinegger / kraken-protocol
  Metagenome analysis using the Kraken software suite
  ☆31Updated 2 years ago
• CuiMiao-HIT / miniSNV
  ☆18Updated 5 months ago
• raeslab / GMMs
  A manually curated database of human gut metabolic modules.
  ☆18Updated 6 years ago
• tdseher / simple-codon-optimizer
  Simple Python program to perform codon optimization or heterology calculations.
  ☆10Updated 4 years ago