boxiangliu / covseq
CoV-Seq: COVID-19 Genomic Sequence Database and Visualization
☆14Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for covseq
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆31Updated 5 months ago
- GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions☆20Updated last year
- A Quality Control filter and parser for NCBI BLAST XML results.☆16Updated 4 years ago
- A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more☆17Updated 5 months ago
- an ensemble usage of MAFFT-linsi --add on large datasets☆11Updated 5 months ago
- Python bindings for the TaxonKit library☆31Updated 3 months ago
- PanGenomePipeline☆15Updated 6 months ago
- Demonstrating best practices for bioinformatics command line tools☆26Updated 4 years ago
- Ultra rapid nanopore whole genome sequencing pipeline, published in https://www.nature.com/articles/s41587-022-01221-5☆18Updated 4 months ago
- A web-based "serverless" viewer of QIIME 2 Artifacts and Visualizations☆14Updated 11 months ago
- programs and scripts, mainly python, for analyses related to nucleic or protein sequences☆24Updated 2 months ago
- uorf4u is a bioinformatics tool for conserved upstream ORF annotation.☆13Updated last year
- Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.☆18Updated 6 months ago
- Package that facilitates pulling database entries from KEGG via its REST API☆9Updated last year
- Listing of GPU based bioinformatics software & sites & publications☆10Updated 2 years ago
- Evolcust retrieves groups of genes that appear clustered together in groups of species☆15Updated 2 years ago
- Count and compare 16S rRNA genes within a genus☆13Updated 3 months ago
- Mutation tracker for microbial genomes☆15Updated 4 years ago
- Network Visualization using both GUI and Programming☆27Updated 4 months ago
- A Bio2BEL package for integrating pathway-related information from KEGG in BEL☆13Updated 2 years ago
- phylogenetic analyses informed by deep mutational scanning data☆14Updated 4 months ago
- Course Materials for EN.601.452 / AS.020.415 Computational Biomedical Research & Advanced Biomedical Research☆13Updated 2 years ago
- A pipeline for construction and graphical visualization of annotated pangenome networks.☆15Updated 6 years ago
- MeShClust2: Application of alignment-free identity scores in clustering long DNA sequences☆14Updated 2 years ago
- EARRINGS: An efficient and ingenious adapter removal design for large-scale NGS meta-analyses☆9Updated last month
- Map genetic variants and protein positions to protein interfaces in 3D☆13Updated last year
- Open source short linear motif discovery and sequence analysis☆23Updated last month
- 16S pipeline using qiime2 created with snakemake☆10Updated 2 weeks ago
- ☆9Updated 4 years ago
- A method for measuring allele-specific TL and characterizing telomere variant repeat (TVR) sequences from long reads.☆12Updated 2 weeks ago