sjdlabgroup / SAHMILinks
☆84Updated 11 months ago
Alternatives and similar repositories for SAHMI
Users that are interested in SAHMI are comparing it to the libraries listed below
Sorting:
- Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022☆37Updated last year
- Basic workflow for ATAC-seq analysis☆82Updated last year
- Analysis pipeline for ATAC-seq data☆68Updated last year
- wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq☆62Updated 2 months ago
- Code for the identification step for CSI-Microbes☆30Updated 8 months ago
- ☆45Updated 4 years ago
- ☆86Updated last year
- Integrative pathway enrichment analysis of multivariate omics data☆113Updated 3 weeks ago
- ☆61Updated 4 years ago
- ☆113Updated 5 months ago
- From RNA-seq raw reads to enriched pathways by DEGs☆32Updated last year
- An open source and flexible pipeline to analysis high-throughput DNBelab C Series single-cell RNA datasets☆103Updated last week
- SCSA: cell type annotation for single-cell RNA-seq data☆91Updated 2 years ago
- Transcriptomics Visualization R package.☆73Updated 3 months ago
- Pan-cancer mycobiome atlas☆27Updated 2 years ago
- The code for running the analysis component of CSI-Microbe☆12Updated last year
- Generalized Reporter Score-based Functional Enrichment Method for Omics Data☆75Updated last month
- SNV calling from single cell sequencing☆104Updated 8 months ago
- An elegant package to visualize gene structures☆79Updated 2 years ago
- Bayesian network plot for the enrichment analysis results☆64Updated 10 months ago
- Comprehensive tutorial for differential methylation analysis, differential variability analysis and integrative analysis☆28Updated last year
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆95Updated 2 years ago
- An integrated platform for modeling gene-regulatory dynamics and networks☆31Updated last year
- The goal of `ggVolcano` is to help users make a beautiful volcano map more easily, including general volcano plot(`ggvolcano`), gradient …☆89Updated 2 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆50Updated last year
- A pipeline to process m6A-seq data and down stream analysis.☆45Updated 5 years ago
- mgatk: mitochondrial genome analysis toolkit☆108Updated 6 months ago
- Scripts for paper entitled "Limits in the detection of m6A changes using MeRIP/m6A-seq☆51Updated 5 years ago
- Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent gen…☆32Updated 4 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆61Updated last year