☆92Sep 3, 2024Updated last year
Alternatives and similar repositories for SAHMI
Users that are interested in SAHMI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code for the identification step for CSI-Microbes☆31Nov 25, 2024Updated last year
- The code for running the analysis component of CSI-Microbe☆12Jan 3, 2024Updated 2 years ago
- Pan-cancer mycobiome atlas☆31Oct 7, 2022Updated 3 years ago
- Software used to develop the TCMA database associated with 10.1016/j.chom.2020.12.001.☆14Nov 26, 2023Updated 2 years ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆18Jul 15, 2025Updated 9 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Microbial analysis in TCGA data☆94Feb 23, 2024Updated 2 years ago
- supplementary tables and files☆10Oct 13, 2023Updated 2 years ago
- Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022☆40Jan 30, 2024Updated 2 years ago
- ☆14May 7, 2022Updated 3 years ago
- ☆11May 24, 2024Updated last year
- Single-cell Analysis of Host-Microbiome Interactions☆11Jul 17, 2025Updated 9 months ago
- The Mouse Gastrointestinal Bacteria Catalogue☆16Apr 14, 2022Updated 4 years ago
- Batch effects removal for microbiome data via conditional quantile regression☆32Aug 23, 2022Updated 3 years ago
- ☆93Aug 29, 2025Updated 8 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Analysis framework for integrating gut microbiome and host gene expression data☆36Apr 25, 2022Updated 4 years ago
- scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cells…☆18Mar 27, 2026Updated last month
- ☆14Feb 21, 2024Updated 2 years ago
- Pipeline for the generation and simulation of personalized Flux Balance Analysis models☆11Feb 14, 2021Updated 5 years ago
- Bostongene cell deconvolution algorithm from RNAseq☆60Jan 15, 2024Updated 2 years ago
- A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.☆31Sep 15, 2023Updated 2 years ago
- Pan-Cancer Single Cell Classifier☆85May 30, 2024Updated last year
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆80Jul 25, 2025Updated 9 months ago
- Predictive models and analysis of cancer prognosis and drug response using primary tumor microbial abundances derived from WGS and RNA-se…☆18Nov 13, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data☆18Apr 15, 2025Updated last year
- A tool for semi-automatic cell type harmonization and integration☆120Mar 9, 2026Updated last month
- Re-analysis of data provided by Gihawi et al. 2023 bioRxiv☆26Aug 8, 2023Updated 2 years ago
- Construct Tumor Transition Zone Microenvironment☆57Jun 25, 2025Updated 10 months ago
- Analyzing chromatin accessibility data in R☆18Jun 23, 2023Updated 2 years ago
- Code repository site for manuscript: Unraveling the Heterogeneity of Tumor-Infiltrating Myeloid Cells in Immune Checkpoint Blockade: A Si…☆13Jun 24, 2023Updated 2 years ago
- HCC single cell analysis for Alvarez, Benhammou et al.☆18Apr 30, 2022Updated 4 years ago
- A shiny package for microbiome functional enrichment analysis☆40Updated this week
- Metagenomics microbial abundance quantification☆28Sep 22, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- MetaSNV, a metagenomic SNV calling pipeline.☆21Mar 25, 2022Updated 4 years ago
- ☆17Nov 5, 2024Updated last year
- Functional Annotation for Single-Cell Transcriptomics☆12Jun 29, 2024Updated last year
- Methods to discover gene programs on single-cell data☆182Apr 1, 2026Updated last month
- IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology. https://iobr.github.…☆288Apr 27, 2026Updated last week
- A single cell sequencing read simulator.☆34Oct 14, 2024Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆102Apr 16, 2026Updated 2 weeks ago