Alternatives and similar repositories for SAHMI

Users that are interested in SAHMI are comparing it to the libraries listed below

• FredHutch / Galeano-Nino-Bullman-Intratumoral-Microbiota_2022
  Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022
  ☆38Updated 2 years ago
• TheHumphreysLab / plot1cell
  ☆120Updated 4 months ago
• bioinfo-ibms-pumc / SCSA
  SCSA: cell type annotation for single-cell RNA-seq data
  ☆94Updated 2 years ago
• reskejak / ATAC-seq
  Basic workflow for ATAC-seq analysis
  ☆91Updated last year
• BaderLab / CellAnnotationTutorial
  Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods
  ☆98Updated 2 years ago
• CebolaLab / ATAC-seq
  Analysis pipeline for ATAC-seq data
  ☆84Updated 2 years ago
• liulab-dfci / RIMA_pipeline
  ☆90Updated 5 months ago
• cellgeni / STARsolo
  wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq
  ☆75Updated 7 months ago
• KChen-lab / Monopogen
  SNV calling from single cell sequencing
  ☆118Updated last year
• MGI-tech-bioinformatics / DNBelab_C_Series_HT_scRNA-analysis-software
  The official pipeline for flexible and high-performance analysis of DNBelab C Serie single-cell data.
  ☆134Updated last week
• rpolicastro / scProportionTest
  ☆74Updated 2 years ago
• BioSenior / ggVolcano
  The goal of `ggVolcano` is to help users make a beautiful volcano map more easily, including general volcano plot(`ggvolcano`), gradient …
  ☆93Updated 2 years ago
• IzarLab / CUIMC-NYP_COVID_autopsy_lung
  ☆43Updated 4 years ago
• fl-yu / CUT-RUNTools-2.0
  CUT&RUN and CUT&Tag data processing and analysis
  ☆113Updated 10 months ago
• hamidghaedi / Methylation_Analysis
  Comprehensive tutorial for differential methylation analysis, differential variability analysis and integrative analysis
  ☆29Updated last year
• JiekaiLab / scTE
  ☆114Updated last year
• Asa12138 / ReporterScore
  Generalized Reporter Score-based Functional Enrichment Method for Omics Data
  ☆85Updated 7 months ago
• songw01 / MEGENA
  Multiscale embedded gene co-expression network analysis
  ☆57Updated 2 years ago
• kerseviciute / aPEAR
  Enrichment Networks for Pathway Enrichment Analysis
  ☆67Updated 2 years ago
• akdess / CaSpER
  ☆87Updated 4 years ago
• tzhu-bio / cisDynet
  An integrated platform for modeling gene-regulatory dynamics and networks
  ☆32Updated 2 months ago
• junjunlab / transPlotR
  An elegant package to visualize gene structures
  ☆83Updated 2 years ago
• PierreBSC / Viral-Track
  ☆63Updated 5 years ago
• ruppinlab / CSI-Microbes-identification
  Code for the identification step for CSI-Microbes
  ☆31Updated last year
• junjunlab / RiboProfiler
  Integrating Ribo-SEQ Upstream and Downstream Analysis
  ☆11Updated last year
• scottzijiezhang / m6A-seq_analysis_workflow
  A pipeline to process m6A-seq data and down stream analysis.
  ☆45Updated 5 years ago
• KChen-lab / METAFlux
  ☆82Updated last year
• YutingPKU / SingleCell-Multiomics
  ☆71Updated 3 years ago
• noriakis / CBNplot
  Bayesian network plot for the enrichment analysis results
  ☆66Updated last year
• atarashansky / SAMap
  SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.
  ☆87Updated last month