Microbiome-based disease prediction with multimodal variational information bottlenecks, Grazioli et al., PLOS Computational Biology 2022
☆25Apr 12, 2022Updated 4 years ago
Alternatives and similar repositories for microbiome-mvib
Users that are interested in microbiome-mvib are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code for "Attentive Variational Information Bottleneck for TCR-peptide Interaction Prediction", Grazioli et al., Bioinformatics 2022☆23Jan 10, 2023Updated 3 years ago
- ☆11May 3, 2022Updated 4 years ago
- ☆18Jan 30, 2023Updated 3 years ago
- ☆10Dec 29, 2021Updated 4 years ago
- Analyses in R and Python Using curatedMetagenomicData☆39Nov 16, 2025Updated 11 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- This is for Meridian (Traditional Chinese Medicine conception) prediction by machining learning method.☆12Sep 30, 2019Updated 7 years ago
- Deep representation learning for disease prediction based on microbiome data☆66Apr 21, 2023Updated 3 years ago
- Analysis framework for integrating gut microbiome and host gene expression data☆36Apr 25, 2022Updated 4 years ago
- Deep Generative Models: Diffusion Models for Molecule Generation☆10Jun 17, 2024Updated 2 years ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆36Apr 1, 2022Updated 4 years ago
- Prototype graphical user interface for QIIME 2☆15Feb 27, 2023Updated 3 years ago
- A light weight shiny based web app to access TCGA data☆15Apr 29, 2015Updated 11 years ago
- mbImpute: an accurate and robust imputation method for microbiome data☆13Aug 19, 2021Updated 5 years ago
- ☆16Nov 5, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆15May 7, 2022Updated 4 years ago
- ☆31Apr 3, 2025Updated last year
- 新型冠状病毒肺炎防疫指南☆16Mar 5, 2020Updated 6 years ago
- ☆19May 15, 2023Updated 3 years ago
- ☆15Dec 15, 2015Updated 10 years ago
- predicting peptide and TCR interaction☆19Jan 27, 2021Updated 5 years ago
- This repository contains code for the paper "Uncertainty Estimation and Calibration with Finite-State Probabilistic RNNs" (Wang, Lawrence…☆17Mar 8, 2021Updated 5 years ago
- This package is archived and further developed under the name RFSurrogates. In this R-package functions are provided to select important …☆11Jul 27, 2023Updated 3 years ago
- 一个全流程AI科研辅助平台，通过API驱动的智能绘图、深度文献分析和自动化流程图生成，将前沿大型语言模型（LLM）无缝集成到科研工作流中。☆16Jul 15, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Official code implementation of PremuNet model.☆17Jun 3, 2025Updated last year
- Re-analysis of data provided by Gihawi et al. 2023 bioRxiv☆27Aug 8, 2023Updated 3 years ago
- Phylogenetic Isometric Log Ratio☆19Apr 1, 2026Updated 6 months ago
- Microbial Whole Genome Sequence data analysis labs for 2014☆29Jul 31, 2020Updated 6 years ago
- ☆11Aug 2, 2025Updated last year
- Microbial community-scale metabolic modeling predicts personalized short-chain-fatty-acid production profiles in the human gut☆10Jun 25, 2024Updated 2 years ago
- Lightweight genome browser for microbial genomes☆11Sep 24, 2026Updated 3 weeks ago
- ☆16May 19, 2025Updated last year
- This project proposes to contribute to fill the knowledge gap about Covid-19SARS-CoV-2 in Brazil and with the global knowledge about the …☆14Apr 27, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆26Aug 10, 2023Updated 3 years ago
- Code, documentation, and tutorials for the DGD model trained on bulk RNA-Seq data.☆13Sep 22, 2026Updated 3 weeks ago
- ☆17May 22, 2023Updated 3 years ago
- Houses deployable code for the SCORCH scoring function and docking pipeline from the related publication: https://doi.org/10.1016/j.jare.…☆18Nov 29, 2022Updated 3 years ago
- A Variational Information Bottleneck Approach to Multi-Omics Data Integration☆24May 11, 2021Updated 5 years ago
- An adaptable Snakemake workflow which uses GATKs best practice recommendations to perform germline mutation calling starting with BAM fil…☆11Sep 17, 2021Updated 5 years ago
- Udacity Self-Driving Car Engineer Nanodegree. Project: Build a Traffic Sign Recognition Classifier☆10Apr 4, 2017Updated 9 years ago