nec-research / microbiome-mvibLinks
Microbiome-based disease prediction with multimodal variational information bottlenecks, Grazioli et al., PLOS Computational Biology 2022
☆25Updated 3 years ago
Alternatives and similar repositories for microbiome-mvib
Users that are interested in microbiome-mvib are comparing it to the libraries listed below
Sorting:
- ☆75Updated last year
- Comprehensive Python client for the Uniprot REST API☆52Updated last month
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆21Updated 2 years ago
- Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA☆23Updated last year
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆36Updated last year
- Multi-class signal peptide prediction and structure decoding model.☆96Updated 9 months ago
- iCodon customizes gene expression based on the codon composition☆15Updated 2 years ago
- Fast and flexible ORF finder☆76Updated 3 years ago
- Neural networks for microbe-metabolite interaction analysis☆125Updated 3 years ago
- G4Hunter (2012_2015)- IECB - Bordeaux☆16Updated 5 years ago
- ☆27Updated last year
- deep learning-inspired explainable sequence model for transcription initiation☆98Updated 8 months ago
- Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python☆30Updated 3 years ago
- HLA-II ligand predictor.☆45Updated 2 years ago
- BGC Detection and Classification Using Deep Learning☆155Updated last year
- ☆33Updated 9 months ago
- Microbial analysis in TCGA data☆92Updated last year
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆38Updated 5 months ago
- ☆57Updated last week
- Create synthetic DIA LC-MS/MS for proteomics experiments☆15Updated 2 years ago
- Logan Unitigs and Contigs☆176Updated last month
- A transmembrane helix finder in Python 3.☆39Updated 2 years ago
- A Rich renderable for viewing Multiple Sequence Alignments in the terminal.☆85Updated 3 years ago
- Predicting gene expression levels from genomic sequences☆55Updated 5 years ago
- DeepTM: A deep learning setup for prediction of transmembrane proteins☆13Updated 7 years ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆34Updated 3 years ago
- ☆15Updated 2 years ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆64Updated last week
- gutSMASH☆55Updated last month
- Deep representation learning for disease prediction based on microbiome data☆62Updated 2 years ago