eukref / pipelineLinks
EukRef curation pipeline
☆13Updated 4 years ago
Alternatives and similar repositories for pipeline
Users that are interested in pipeline are comparing it to the libraries listed below
Sorting:
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆68Updated last year
- Protist Ribosomal Reference database (PR2) - SSU rRNA gene database☆82Updated 2 months ago
- Using ggtree to build phylogenetic trees☆48Updated 9 months ago
- Automatically exported from code.google.com/p/jmodeltest2☆81Updated 3 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 4 years ago
- Recovering genes from targeted sequence capture data☆126Updated 2 months ago
- Massively parallel phylogenetic placement of genetic sequences☆84Updated 3 years ago
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆91Updated 3 weeks ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 2 years ago
- GraftM - Rapid community profiles from metagenomes☆46Updated last year
- Scripts and tutorials on how to assemble individual microbial genomes from metagenomes☆81Updated 9 years ago
- Automated de novo assembly of whole chloroplast genomes.☆47Updated 11 months ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆46Updated 5 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆30Updated 5 years ago
- Automated pipeline for analyses of fungal ITS from the Illumina☆31Updated 3 months ago
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆83Updated 9 years ago
- Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics☆21Updated 2 years ago
- A tool to identify and annotate homoplasies on a phylogeny and sequence alignment☆20Updated 4 years ago
- Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file☆71Updated 11 months ago
- A robust and fast clustering method for amplicon-based studies☆31Updated 2 years ago
- Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake☆49Updated last year
- IS mapping software☆56Updated 3 years ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆56Updated 3 years ago
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆65Updated 2 years ago
- Synteny Imager☆64Updated last month
- ☆76Updated last year
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆88Updated last year
- Sydney Phylogenetics Workshop☆66Updated last month
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆56Updated last year