eukref / pipelineLinks
EukRef curation pipeline
☆13Updated 4 years ago
Alternatives and similar repositories for pipeline
Users that are interested in pipeline are comparing it to the libraries listed below
Sorting:
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆71Updated last year
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 4 years ago
- Protist Ribosomal Reference database (PR2) - SSU rRNA gene database☆82Updated 3 months ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- Using ggtree to build phylogenetic trees☆50Updated 11 months ago
- A robust and fast clustering method for amplicon-based studies☆31Updated 2 years ago
- Scripts and tutorials on how to assemble individual microbial genomes from metagenomes☆80Updated 9 years ago
- Massively parallel phylogenetic placement of genetic sequences☆84Updated 3 years ago
- Automatically exported from code.google.com/p/jmodeltest2☆81Updated 4 years ago
- Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics☆22Updated 2 years ago
- Automated pipeline for analyses of fungal ITS from the Illumina☆31Updated 5 months ago
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆91Updated 2 months ago
- This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequen…☆32Updated 2 years ago
- Sydney Phylogenetics Workshop☆66Updated 3 months ago
- Micro 612 genomics workshop☆37Updated 4 years ago
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆32Updated last year
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆82Updated 9 years ago
- ☆78Updated last year
- General procedure for making QIIME 2 compatible SILVA reference files☆20Updated last year
- GraftM - Rapid community profiles from metagenomes☆45Updated last year
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆45Updated 5 years ago
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing☆18Updated last year
- Recovering genes from targeted sequence capture data☆128Updated 3 months ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆29Updated 5 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆88Updated last year
- Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file☆73Updated last year
- ☆50Updated 4 years ago
- Speedy versions of phyloseq functions☆48Updated last year
- ☆62Updated 5 years ago