eukref / pipelineLinks
EukRef curation pipeline
☆13Updated 4 years ago
Alternatives and similar repositories for pipeline
Users that are interested in pipeline are comparing it to the libraries listed below
Sorting:
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆72Updated last year
- Protist Ribosomal Reference database (PR2) - SSU rRNA gene database☆84Updated last week
- Using ggtree to build phylogenetic trees☆50Updated last year
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆33Updated 5 years ago
- Massively parallel phylogenetic placement of genetic sequences☆86Updated 3 years ago
- Automatically exported from code.google.com/p/jmodeltest2☆82Updated 4 years ago
- Scripts and tutorials on how to assemble individual microbial genomes from metagenomes☆80Updated 9 years ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆29Updated 5 years ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆57Updated 3 years ago
- treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes☆106Updated 10 months ago
- A robust and fast clustering method for amplicon-based studies☆31Updated 2 years ago
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆93Updated 4 months ago
- Recovering genes from targeted sequence capture data☆130Updated 5 months ago
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆82Updated 9 years ago
- Automated pipeline for analyses of fungal ITS from the Illumina☆31Updated 7 months ago
- Making whole bacterial genome sequencing data analysis easy☆114Updated 7 months ago
- ☆79Updated 2 years ago
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆33Updated last year
- General procedure for making QIIME 2 compatible SILVA reference files☆20Updated last year
- Speedy versions of phyloseq functions☆48Updated last year
- Micro 612 genomics workshop☆38Updated 4 years ago
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆88Updated 2 years ago
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆88Updated 5 months ago
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆77Updated 4 months ago
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆94Updated last year
- Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake☆49Updated last year
- Sydney Phylogenetics Workshop☆67Updated 5 months ago
- Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics☆24Updated 2 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆47Updated 5 years ago