EukRef curation pipeline
☆13May 11, 2021Updated 4 years ago
Alternatives and similar repositories for pipeline
Users that are interested in pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Sequence Taxonomic Assignment by Massive Pairwise Alignments☆14Jun 27, 2023Updated 2 years ago
- Code to generate re-assemblies of the Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)☆23Apr 14, 2019Updated 6 years ago
- ☆11Aug 26, 2022Updated 3 years ago
- A fast terminal-based viewer and command-line toolkit for molecular sequences (DNA, AA). View, translate, convert (to FASTA), and combine…☆38Mar 10, 2026Updated last month
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22May 14, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Protist Ribosomal Reference database (PR2) - SSU rRNA gene database☆85Feb 26, 2026Updated last month
- Phratch is based on Scratch with more features☆21Mar 20, 2019Updated 7 years ago
- Utilities for community ecology analysis☆20Oct 2, 2020Updated 5 years ago
- A library for working with phylogenetic and population genetic data.☆66Mar 31, 2026Updated last week
- Another Qlik Sense Table Object☆11May 25, 2020Updated 5 years ago
- Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome size☆12Sep 30, 2025Updated 6 months ago
- ☆15Jun 26, 2025Updated 9 months ago
- functions for analyzing phyloseq data☆28Feb 4, 2025Updated last year
- PhyloFisher is a software package written in Python3 that can be used for the creation, analysis, and visualization of phylogenomic datas…☆35Feb 6, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- ☆13Feb 22, 2024Updated 2 years ago
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆16Jul 1, 2024Updated last year
- A tool to filter BUSCO output into single-copy gene files for phylogenomics☆13Jul 24, 2024Updated last year
- Distance denoise by Entropy☆15Oct 17, 2025Updated 5 months ago
- R tools for integrating phylogenies and ecology☆39Jan 6, 2024Updated 2 years ago
- A tool to analyze telomeric reads from WGS or telobait-capture long-read sequencing data☆10Oct 1, 2024Updated last year
- R package MiscMetabar: Miscellaneous functions for metabarcoding analysis☆21Mar 28, 2026Updated 2 weeks ago
- reference implementation of GA4GH WGS Quality Control Standards☆11Nov 25, 2025Updated 4 months ago
- The Exome Coverage and Identification Report displays the coverage of every target region in your capture design. It also displays regio…☆14Apr 22, 2015Updated 10 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- A robust and fast clustering method for amplicon-based studies☆146Mar 29, 2026Updated last week
- Workshop materials for "Designing ggplots"☆14Nov 23, 2019Updated 6 years ago
- ☆17Aug 18, 2012Updated 13 years ago
- Config and setup to run nf-core/raredisease pipeline☆10Sep 11, 2025Updated 7 months ago
- R interface to GenBank/GenPept files☆14Jan 12, 2021Updated 5 years ago
- A nextflow pipeline with a GMS touch for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbio…☆10Jan 23, 2026Updated 2 months ago
- ☆22Mar 28, 2018Updated 8 years ago
- A web app for environmental DNA metabarcoding analysis☆11Dec 30, 2021Updated 4 years ago
- BeerDeCoded first results using ITS☆19Oct 8, 2017Updated 8 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆89Oct 27, 2023Updated 2 years ago
- ☆14Dec 14, 2017Updated 8 years ago
- ☆17Updated this week
- Contig Ploidy and Allele Dosage Estimation☆11Oct 30, 2015Updated 10 years ago
- Massively parallel phylogenetic placement of genetic sequences☆86Aug 23, 2022Updated 3 years ago
- ☆11Oct 7, 2025Updated 6 months ago
- This repository contains the R codes and relevant data for performing the S.PhyloMaker function.☆15Sep 22, 2020Updated 5 years ago