biocore / empLinks
Code repository of the Earth Microbiome Project.
☆163Updated 2 years ago
Alternatives and similar repositories for emp
Users that are interested in emp are comparing it to the libraries listed below
Sorting:
- Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tes…☆91Updated 3 months ago
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆116Updated 2 years ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆165Updated 2 months ago
- A user-friendly workflow for phylogenomics☆222Updated this week
- Sparse InversE Covariance estimation for Ecological Association and Statistical Inference☆221Updated 3 weeks ago
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆247Updated this week
- Fast expectation maximization for microbial source tracking☆133Updated last year
- ☆78Updated last year
- Welcome to the mothur project, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology & Imm…☆274Updated last week
- Import qiime2 artifacts to R☆173Updated 11 months ago
- Statistical Analysis of Metagenomic Profiles☆93Updated 5 years ago
- A companion R package for the MicrobiomeAnalyst web server☆128Updated this week
- FUNGuild: parsing OTUs into functional guilds☆123Updated last year
- Network construction, analysis, and comparison for microbial compositional data☆171Updated 8 months ago
- ☆62Updated 6 years ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆121Updated last year
- VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data☆138Updated 5 years ago
- ☆85Updated last year
- Convert various sequence formats to FASTA☆139Updated 3 years ago
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆126Updated last month
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆219Updated last month
- A robust, extensible metagenomics pipeline☆174Updated last week
- An R package for microbial community analysis in an environmental context☆67Updated 5 years ago
- ☆74Updated 4 years ago
- baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…☆112Updated this week
- Curated Metagenomic Data of the Human Microbiome☆143Updated 3 weeks ago
- Microbial co-occurrence network inferred from Earth Microbiome Project☆26Updated 5 years ago
- functions to analyse sanger sequencing reads in R☆104Updated this week
- A variational framework for inferring population structure from SNP genotype data.☆143Updated 2 years ago
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆150Updated last year