biocore / gneiss
compositional data analysis toolbox
☆60Updated 2 years ago
Alternatives and similar repositories for gneiss:
Users that are interested in gneiss are comparing it to the libraries listed below
- Statistical analysis for sparse high-throughput sequencing☆69Updated 2 months ago
- An R package for microbial community analysis in an environmental context☆66Updated 4 years ago
- SHallow shOtGUN profiler☆54Updated 2 years ago
- Robust Aitchison PCA from sparse count data☆33Updated 2 years ago
- Vanilla regression methods for microbiome differential abundance analysis☆58Updated 4 years ago
- Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …☆30Updated 4 years ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆26Updated 6 years ago
- Database of genomes integrated from the gut microbiome and other environments☆44Updated 2 years ago
- ☆43Updated 7 years ago
- The Biological Observation Matrix (BIOM) Format Project☆92Updated 2 months ago
- Pipeline for computing OTU tables from 16S or ITS amplicon sequencing data.☆31Updated last year
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆70Updated 2 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- ☆34Updated last year
- ☆23Updated 6 years ago
- Sparse Cooccurence Network Investigation for Compositional data☆24Updated 3 months ago
- ☆40Updated 7 months ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆31Updated 4 years ago
- diversity estimation under ecological networks☆83Updated last year
- Workshop materials for shotgun metagenomics☆36Updated 7 years ago
- A set of R scripts for the analysis of microbial profiles☆42Updated 9 months ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆115Updated 9 months ago
- Deep learning for Metagenome Assembly Error Detection☆26Updated 4 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated last month
- SEER, reimplemented in python 🐍🔮☆115Updated 3 months ago
- Visualize microbiome data with black magic ggtree☆68Updated 4 years ago
- ☆20Updated 4 years ago
- Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples☆33Updated 2 years ago
- Compare different differential abundance and expression methods☆51Updated 2 years ago
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago