biocore / gneissLinks
compositional data analysis toolbox
☆60Updated 2 years ago
Alternatives and similar repositories for gneiss
Users that are interested in gneiss are comparing it to the libraries listed below
Sorting:
- SHallow shOtGUN profiler☆53Updated 3 years ago
- Sparse Cooccurence Network Investigation for Compositional data☆25Updated last year
- Database of genomes integrated from the gut microbiome and other environments☆44Updated 2 years ago
- Statistical analysis for sparse high-throughput sequencing☆70Updated 11 months ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆41Updated last year
- An R package for microbial community analysis in an environmental context☆67Updated 5 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- Robust Aitchison PCA from sparse count data☆37Updated 3 years ago
- RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s☆59Updated 2 years ago
- ☆67Updated 9 years ago
- Woltka: a versatile meta'omic data classifier☆75Updated 2 months ago
- ☆23Updated 7 years ago
- ☆41Updated last month
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 3 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- A visualization tool for exploratory data analysis of metagenomic data☆37Updated 3 years ago
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆77Updated 4 months ago
- Vanilla regression methods for microbiome differential abundance analysis☆60Updated 5 years ago
- Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.☆50Updated 3 years ago
- De novo Extraction of Strains from MetAgeNomes☆71Updated 5 years ago
- MEGAN Community Edition☆72Updated last year
- Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …☆31Updated 5 years ago
- ☆21Updated 6 months ago