compositional data analysis toolbox
☆63Dec 15, 2022Updated 3 years ago
Alternatives and similar repositories for gneiss
Users that are interested in gneiss are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python package for compositional data analysis including CLR/ILR, proportionality, partial correlation with basis shrinkage, and visualiz…☆30May 11, 2026Updated 5 months ago
- Python package for compositional data analysis☆15Dec 1, 2023Updated 2 years ago
- Workshop for NGS'18 conference, Barcelona 2018☆24Nov 22, 2018Updated 7 years ago
- Deblur is a greedy deconvolution algorithm based on known read error profiles.☆102Mar 8, 2025Updated last year
- An R package to visualize high-throughput sequencing data.☆13Nov 18, 2019Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- An HMM and Phylogenetic Placement based Ultra-Fast Taxonomy Assignment Tool for 16S sequencing☆11Updated this week
- Qiita - A multi-omics databasing effort☆135Oct 20, 2026Updated last week
- The Biological Observation Matrix (BIOM) Format Project☆97Oct 12, 2026Updated 2 weeks ago
- An R package for Partial Least Squares analysis and plotting for (high dimensional) compositional data☆19Apr 18, 2022Updated 4 years ago
- [OFFICIAL] [CoDA] An R package to calculate proportionality and other measures for compositional data☆82May 19, 2026Updated 5 months ago
- Sample search by metadata and features☆49Aug 31, 2023Updated 3 years ago
- A model-based visualization method for microbiome data☆16Jul 17, 2026Updated 3 months ago
- Snakemake-based amplicon processing protocol for 16S and ITS sequences.☆13Mar 18, 2024Updated 2 years ago
- An R package for learning log-ratio biomarkers from high-throughput sequencing data.☆23Mar 31, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Phylogenetic Isometric Log Ratio☆19Apr 1, 2026Updated 6 months ago
- ☆82Dec 4, 2023Updated 2 years ago
- Confirming specific taxonomic groups within your samples.☆19Dec 21, 2020Updated 5 years ago
- Simplex space operations for compositional data implemented in Python.☆13Feb 17, 2022Updated 4 years ago
- Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TE…☆93Jul 13, 2026Updated 3 months ago
- Fast and accurate Average Genome Size and 16S rRNA gene Average Copy Number computation in metagenomic data☆17Dec 20, 2024Updated last year
- ☆22Sep 27, 2019Updated 7 years ago
- A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).☆95Nov 24, 2025Updated 11 months ago
- ☆43Oct 10, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Compositional data analysis in Julia☆65Jul 30, 2026Updated 2 months ago
- OHMI: The Ontology of Host-Microbiome Interactions☆12May 14, 2026Updated 5 months ago
- EnsembleAssembler performs de novo assembly of pathogen genomes from metagenomic samples sequenced using Illumina platforms☆10Nov 30, 2014Updated 11 years ago
- Sparse InversE Covariance estimation for Ecological Association and Statistical Inference☆234Aug 12, 2026Updated 2 months ago
- A web app for environmental DNA metabarcoding analysis☆11Dec 30, 2021Updated 4 years ago
- Hierarchical genome assembly: de novo bacterial genome assembly using high coverage short sequencing reads☆11Dec 27, 2016Updated 9 years ago
- ☆14Oct 21, 2026Updated last week
- ☆12Apr 20, 2018Updated 8 years ago
- Dissimilarity Overlap Curve analysis☆11Nov 14, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- selbal: selection of balances for microbial signatures☆33Feb 24, 2025Updated last year
- Strain/species identification in metagenomes using genome-specific markers☆10Aug 17, 2015Updated 11 years ago
- Sync paired-end FASTA/Q files and keep singleton reads☆19Aug 29, 2026Updated 2 months ago
- A tutorial on methods of 16S analysis with QIIME 1☆72Jul 26, 2019Updated 7 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆24Jan 24, 2024Updated 2 years ago
- Library for KEGG pathway enrichment analysis☆20Oct 18, 2026Updated last week
- Sparse Cooccurence Network Investigation for Compositional data☆26Oct 14, 2026Updated 2 weeks ago