biocore / gneissLinks
compositional data analysis toolbox
☆59Updated 2 years ago
Alternatives and similar repositories for gneiss
Users that are interested in gneiss are comparing it to the libraries listed below
Sorting:
- SHallow shOtGUN profiler☆54Updated 3 years ago
- Database of genomes integrated from the gut microbiome and other environments☆45Updated 2 years ago
- Robust Aitchison PCA from sparse count data☆35Updated 2 years ago
- Statistical analysis for sparse high-throughput sequencing☆69Updated 6 months ago
- ☆23Updated 7 years ago
- Sparse Cooccurence Network Investigation for Compositional data☆24Updated 8 months ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples☆34Updated 3 months ago
- ☆67Updated 9 years ago
- An R package for microbial community analysis in an environmental context☆67Updated 4 years ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 6 years ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆37Updated last year
- Protein Alignment and Detection Interface☆61Updated last year
- Scalable creating/updating of metagenome profiling databases☆61Updated 3 weeks ago
- Pipeline for computing OTU tables from 16S or ITS amplicon sequencing data.☆31Updated 2 years ago
- ☆41Updated 2 months ago
- ☆35Updated last year
- Sample search by metadata and features☆47Updated last year
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 3 years ago
- Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …☆30Updated 4 years ago
- RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s☆58Updated 2 years ago
- Woltka: a versatile meta'omic data classifier☆74Updated 3 months ago
- ☆37Updated last year
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆82Updated 9 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- A package to annotate protein sequences☆59Updated 4 months ago
- AMBER: Assessment of Metagenome BinnERs☆31Updated 6 months ago
- gutSMASH☆55Updated 6 months ago
- A visualization tool for exploratory data analysis of metagenomic data☆37Updated 3 years ago
- OPAL: Open-community Profiling Assessment tooL☆29Updated 6 months ago