Analysis of Composition of Microbiomes
☆11Jun 17, 2016Updated 10 years ago
Alternatives and similar repositories for ancomP
Users that are interested in ancomP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Experimental pipeline to perform de novo PICRUSt on de-noised amplicon sequence variants (ASV)☆19Oct 23, 2018Updated 7 years ago
- Sample search by metadata and features☆48Aug 31, 2023Updated 2 years ago
- ☆12Feb 26, 2019Updated 7 years ago
- 16S taxonomy assignment using an ecosystem-specific database.☆17Feb 13, 2023Updated 3 years ago
- ✅ PeopleBudget is an open-source tool for hosting participatory budgets elections at the local level.☆10Oct 4, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Zero-Inflated Beta Random Effect model☆31Mar 6, 2026Updated 4 months ago
- Testing hybridization using species trees☆10Aug 25, 2017Updated 8 years ago
- An HMM and Phylogenetic Placement based Ultra-Fast Taxonomy Assignment Tool for 16S sequencing☆11Mar 16, 2026Updated 4 months ago
- Program to run the SOWH test (likelihood-based test used to compare tree topologies which are not specified a priori)☆11May 3, 2024Updated 2 years ago
- ☆18Oct 15, 2025Updated 9 months ago
- ☆12May 12, 2019Updated 7 years ago
- 10x Genomics Linked-Read Alignment, Variant Calling, Phasing, and Structural Variant Calling☆33Jul 31, 2020Updated 5 years ago
- Ontology-aware neural network (ONN) for microbial community sample source tracking!☆10Oct 11, 2022Updated 3 years ago
- Protist Ribosomal Reference database (PR2) - SSU rRNA gene database☆86Feb 26, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A QGIS plugin for creating CZML files☆13Feb 11, 2021Updated 5 years ago
- Python library for fitting massive mixture models using DP priors and GPU computation.☆23Apr 7, 2016Updated 10 years ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Aug 31, 2017Updated 8 years ago
- Python implementation of Force-Directed Edge Bundling for Graph Visualization☆20May 3, 2024Updated 2 years ago
- AUGUSTUS v3.2.1 for installation on Mac OS X☆12May 21, 2018Updated 8 years ago
- A pipeline for extracting SSU rRNA gene from wgs data and applying them for further diversity analysis☆10Jan 30, 2016Updated 10 years ago
- ☆14Jun 17, 2023Updated 3 years ago
- CyanoSeq: A curated cyanobacterial 16S rRNA database for next-generation sequencing☆16Oct 9, 2024Updated last year
- The shiny app that accompanies the ngsReports R package☆14Jun 10, 2021Updated 5 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Infomap Bioregions: Interactive mapping of biogeographical regions from species distributions☆12Jun 20, 2026Updated last month
- DPPDIV☆12Apr 10, 2020Updated 6 years ago
- A web app for environmental DNA metabarcoding analysis☆11Dec 30, 2021Updated 4 years ago
- ☆16Sep 27, 2022Updated 3 years ago
- CREST - Classification Resources for Environmnetal Sequence Tags, is a collection of software and databases for taxonomic classification …☆12Mar 20, 2022Updated 4 years ago
- A metagenomic and isolate assembly and analysis pipeline built with AMOS☆92Nov 20, 2017Updated 8 years ago
- Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tes…☆92Aug 22, 2025Updated 11 months ago
- Targeted Learning for Survival Analysis☆22Nov 19, 2023Updated 2 years ago
- ☆13Jun 1, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Programs and documentation for the SAMSA pipeline, version 1.0☆16Dec 16, 2019Updated 6 years ago
- ☆44Nov 20, 2017Updated 8 years ago
- This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees☆16Jan 9, 2019Updated 7 years ago
- Analysis of single cell RNA-Seq data from Veres et al.☆14Dec 10, 2019Updated 6 years ago
- This is an R package for element cycle analysis using metagenomic data.☆48Feb 2, 2026Updated 5 months ago
- ☆12Sep 6, 2022Updated 3 years ago
- Statistical Analysis of Metagenomic Profiles☆94Jul 2, 2026Updated 3 weeks ago