mortonjt / ancomPLinks
Analysis of Composition of Microbiomes
☆11Updated 9 years ago
Alternatives and similar repositories for ancomP
Users that are interested in ancomP are comparing it to the libraries listed below
Sorting:
- Experimental pipeline to perform de novo PICRUSt on de-noised amplicon sequence variants (ASV)☆19Updated 7 years ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Updated 8 years ago
- Using kallisto for metagenomic analysis☆49Updated 8 years ago
- Supplementary information to "Computational correction of index switching in multiplexed sequencing libraries" (Larsson et. al 2018).☆15Updated 4 years ago
- ☆14Updated 5 years ago
- Merge transcriptome assemblies☆31Updated 9 years ago
- ☆63Updated 4 years ago
- A set of R functions that help faciliate a lot of tedious processing☆18Updated 7 years ago
- Maximum likelihood demultiplexing☆48Updated 8 months ago
- A reference viral database (RVDB)☆26Updated 6 years ago
- A microbial profiling framework for metagenomic analysis☆24Updated 5 years ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 7 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago
- ☆23Updated 7 years ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 8 years ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics☆20Updated 6 years ago
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- Statistical analysis for sparse high-throughput sequencing☆69Updated 10 months ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated 3 months ago
- Updated Kraken DB install scripts to cope with new-ish NCBI structure☆48Updated 8 years ago
- A shiny package for microbiome functional enrichment analysis☆36Updated 6 months ago
- Protein Alignment and Detection Interface☆60Updated last year
- Public Health England SNP calling pipeline.☆37Updated 7 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆39Updated last year
- Evolutionary Transcriptomics with R☆46Updated 2 weeks ago
- Scripts and instructions for submitting annotated microbial genomes to Genbank☆15Updated 9 years ago
- SHallow shOtGUN profiler☆53Updated 3 years ago
- Miscellaneous Bioinformatics scripts etc mostly in Python☆45Updated 3 weeks ago
- Rank-based Gene Ontology analysis of gene expression data☆42Updated 2 years ago