The Biological Observation Matrix (BIOM) Format Project
☆97Dec 23, 2025Updated 4 months ago
Alternatives and similar repositories for biom-format
Users that are interested in biom-format are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tool to easily install QIIME's dependencies on Linux systems☆33Oct 14, 2015Updated 10 years ago
- Emperor a tool for the analysis and visualization of large microbial ecology datasets☆54Jan 12, 2026Updated 3 months ago
- Development version of the biom package for R☆24Apr 13, 2021Updated 5 years ago
- compositional data analysis toolbox☆60Dec 15, 2022Updated 3 years ago
- Conversion software tool for producing both annotation and tree files for GraPhlAn☆11Feb 2, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Sample search by metadata and features☆48Aug 31, 2023Updated 2 years ago
- Assessing the quality of prokaryotic genomes, filtering and dereplication☆11Aug 26, 2022Updated 3 years ago
- Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.☆285Dec 19, 2022Updated 3 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆32Aug 22, 2023Updated 2 years ago
- A robust and fast clustering method for amplicon-based studies☆147Updated this week
- Qiita - A multi-omics databasing effort☆131Apr 23, 2026Updated last week
- Versatile open-source tool for microbiome analysis☆745Apr 24, 2026Updated last week
- Metagenomic profiling and phylogenetic distances via common kmers☆42Jul 12, 2021Updated 4 years ago
- A repository for storing code and data related to a systematic comparison of short read taxonomy assignment tools☆16Oct 11, 2017Updated 8 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ATLAS - Three commands to start analyzing your metagenome data☆405Nov 28, 2025Updated 5 months ago
- ☆23May 16, 2020Updated 5 years ago
- Rachis Framework (Formerly Known as QIIME 2 Framework (Q2F))☆528Apr 28, 2026Updated last week
- A library for working with phylogenetic and population genetic data.☆67Apr 24, 2026Updated last week
- shotgun pipeline☆12Apr 3, 2019Updated 7 years ago
- A gene-targeted assembler tool☆19Oct 27, 2017Updated 8 years ago
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆344Mar 16, 2026Updated last month
- Very very long reads, indeed☆13Apr 30, 2017Updated 9 years ago
- Hclust2 is a handy tool for plotting heat-maps with several useful options to produce high quality figures that can be used in publicatio…☆13Jan 14, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Interactive tools for metagenome visualization and binning in R☆27Jun 28, 2018Updated 7 years ago
- Interactive tutorials for using scikit-bio in biological research☆67Feb 20, 2026Updated 2 months ago
- Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)☆14Feb 14, 2021Updated 5 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆25Jan 24, 2024Updated 2 years ago
- 🌈 Interactive analysis of metagenomics data☆449Sep 17, 2025Updated 7 months ago
- phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; an…☆645Feb 27, 2026Updated 2 months ago
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆14Oct 10, 2025Updated 6 months ago
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.☆18Jul 31, 2025Updated 9 months ago
- Deblur is a greedy deconvolution algorithm based on known read error profiles.☆99Mar 8, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A robust and fast clustering method for amplicon-based studies☆30Mar 23, 2023Updated 3 years ago
- Code used in MiCE 8992 Spring 2016☆44Apr 19, 2016Updated 10 years ago
- KEGG Module Evaluation Tool☆33Mar 5, 2026Updated 2 months ago
- Woltka: a versatile meta'omic data classifier☆79Sep 8, 2025Updated 7 months ago
- An integrated pipeline for estimating strain-level genomic variation from metagenomic data☆135Oct 6, 2023Updated 2 years ago
- EMIRGE reconstructs full length ribosomal genes from short read sequencing data.☆38Sep 15, 2023Updated 2 years ago
- EukRef curation pipeline☆13May 11, 2021Updated 4 years ago