biocore / biom-formatLinks
The Biological Observation Matrix (BIOM) Format Project
โ94Updated 3 weeks ago
Alternatives and similar repositories for biom-format
Users that are interested in biom-format are comparing it to the libraries listed below
Sorting:
- Sample search by metadata and featuresโ47Updated last year
- SEER, reimplemented in python ๐๐ฎโ123Updated 2 months ago
- An imagemagick-like frontend to Biopython SeqIOโ115Updated last year
- MEGAN Community Editionโ72Updated last year
- an interactive viewer for populations of bacterial genomes linked by a phylogenyโ126Updated last year
- An integrated pipeline for estimating strain-level genomic variation from metagenomic dataโ128Updated last year
- Pathoscope: Species identification and strain attribution with unassembled sequencing dataโ58Updated 6 years ago
- SINA - Reference based multiple sequence alignmentโ42Updated 4 years ago
- Recentrifuge: robust comparative analysis and contamination removal for metagenomicsโ94Updated 3 months ago
- viral-ngs: complete pipelinesโ65Updated last week
- Antibiotic resistance prediction in minutesโ110Updated 8 months ago
- Vanilla regression methods for microbiome differential abundance analysisโ59Updated 4 years ago
- Interactive visualization of assembly graphsโ82Updated 3 years ago
- SHallow shOtGUN profilerโ54Updated 3 years ago
- Woltka: a versatile meta'omic data classifierโ75Updated 4 months ago
- Pairwise SNP distance matrix from a FASTA sequence alignmentโ137Updated last year
- Bacterial Isolate Genome Sequence Database (BIGSdb): A platform for gene-by-gene bacterial population annotation and analysis.โ70Updated 2 weeks ago
- EMIRGE reconstructs full length ribosomal genes from short read sequencing data.โ38Updated last year
- A scalable bacterial genome assembly, annotation and analysis pipelineโ74Updated last year
- De novo Extraction of Strains from MetAgeNomesโ71Updated 5 years ago
- In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities givenโฆโ82Updated 7 years ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWooโฆโ56Updated 3 years ago
- A robust, extensible metagenomics pipelineโ172Updated this week
- Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.โ48Updated 3 years ago
- โ73Updated 4 years ago
- Processing pipeline for pan-genome visulization and explorationโ140Updated last year
- A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).โ92Updated last year
- Protein Alignment and Detection Interfaceโ61Updated last year
- resources for bioinformatics educationโ86Updated 2 months ago
- Primer schemes for real-time genome epidemiologyโ29Updated 2 years ago