biocore / biom-formatLinks
The Biological Observation Matrix (BIOM) Format Project
☆94Updated 3 weeks ago
Alternatives and similar repositories for biom-format
Users that are interested in biom-format are comparing it to the libraries listed below
Sorting:
- An imagemagick-like frontend to Biopython SeqIO☆115Updated last year
- Recentrifuge: robust comparative analysis and contamination removal for metagenomics☆94Updated last month
- Bioinformatics program inStrain☆173Updated last month
- an interactive viewer for populations of bacterial genomes linked by a phylogeny☆123Updated last year
- ☆82Updated last year
- Sample search by metadata and features☆47Updated last year
- Statistical analysis for sparse high-throughput sequencing☆69Updated 6 months ago
- Bioinformatics tool to find integrons in bacterial genomes☆76Updated last month
- Vanilla regression methods for microbiome differential abundance analysis☆58Updated 4 years ago
- CLI tool to annotate genes with KOfam☆80Updated 2 years ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆55Updated 3 years ago
- Massively parallel phylogenetic placement of genetic sequences☆84Updated 2 years ago
- SEER, reimplemented in python 🐍🔮☆122Updated last month
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆114Updated last year
- A toolbox for comparative genomics.☆104Updated 4 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆74Updated 2 years ago
- Protein Alignment and Detection Interface☆61Updated last year
- Create a tree using Mash distances☆166Updated last year
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆59Updated 5 years ago
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆86Updated last year
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆82Updated 9 years ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆137Updated last year
- SHallow shOtGUN profiler☆54Updated 3 years ago
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated 2 years ago
- DDBJ Fast Annotation and Submission Tool☆79Updated last month
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆71Updated last year
- MEGAN Community Edition☆71Updated 11 months ago
- Statistical Analysis of Metagenomic Profiles☆93Updated 5 years ago
- In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given…☆82Updated 7 years ago