bcgsc / transabyssLinks
de novo assembly of RNA-seq data using ABySS
☆34Updated 2 years ago
Alternatives and similar repositories for transabyss
Users that are interested in transabyss are comparing it to the libraries listed below
Sorting:
- SOAPdenovo-Trans, a de novo transcriptome assembler designed specifically for RNA-Seq. We evaluated its performance on transcriptome data…☆36Updated last year
- De novo transcriptome assembler for short reads☆64Updated 7 years ago
- Error correction for Illumina RNA-seq reads☆67Updated last year
- Get, parse, and extract information from the SRA metadata files☆45Updated 3 years ago
- An efficient way to convert gff3 annotation files into EMBL format ready to submit.☆64Updated 3 months ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆34Updated last year
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 6 months ago
- High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.☆67Updated 2 years ago
- Long Reads Annotation pipeline☆72Updated 3 years ago
- Automatically optimise three of Velvet's assembly parameters.☆48Updated 3 years ago
- Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved …☆56Updated 5 years ago
- PHAST☆77Updated this week
- Annotate DNA sequences for Gene Ontology terms☆42Updated 2 months ago
- Scripts and programs for the Holt Lab's MinION desktop☆32Updated 5 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆76Updated 3 years ago
- A collection of scripts for processing fastq files in ways to improve de novo transcriptome assemblies, and for evaluating those assembli…☆51Updated last year
- Miscellaneous Bioinformatics scripts etc mostly in Python☆45Updated 2 weeks ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆52Updated 5 years ago
- PacBio hybrid error correction through iterative short read consensus☆60Updated 6 years ago
- A fork of exonerate: a generic tool for sequence alignment☆70Updated last year
- In-silico PCR, primer design and padlock design for in-situ sequencing☆52Updated 3 months ago
- Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…☆104Updated 9 months ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- Rank-based Gene Ontology analysis of gene expression data☆42Updated 2 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated last year
- YAMP: Yet Another Metagenomic Pipeline☆60Updated 2 years ago
- ☆35Updated 2 years ago
- WDL’s and Dockerfiles for assembly QC process☆70Updated 3 months ago
- MARS: improving Multiple circular sequence Alignment using Refined Sequences☆31Updated 6 months ago