bcgsc / transabyssLinks
de novo assembly of RNA-seq data using ABySS
☆34Updated last year
Alternatives and similar repositories for transabyss
Users that are interested in transabyss are comparing it to the libraries listed below
Sorting:
- SOAPdenovo-Trans, a de novo transcriptome assembler designed specifically for RNA-Seq. We evaluated its performance on transcriptome data…☆35Updated last year
- Error correction for Illumina RNA-seq reads☆67Updated last year
- De novo transcriptome assembler for short reads☆63Updated 7 years ago
- ☆35Updated 2 years ago
- A fork of exonerate: a generic tool for sequence alignment☆67Updated last year
- Long Reads Annotation pipeline☆72Updated 3 years ago
- An efficient way to convert gff3 annotation files into EMBL format ready to submit.☆62Updated last year
- Fully automated generation of UCSC assembly hubs☆34Updated 9 months ago
- Filter SAM file for soft and hard clipped alignments☆49Updated last year
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- Get, parse, and extract information from the SRA metadata files☆42Updated 2 years ago
- PHAST☆73Updated 3 weeks ago
- A collection of scripts for processing fastq files in ways to improve de novo transcriptome assemblies, and for evaluating those assembli…☆50Updated last year
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆48Updated 4 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆72Updated 3 years ago
- Annotate DNA sequences for Gene Ontology terms☆41Updated 3 years ago
- Code for design of diagnostic PCR primers, and metabarcoding markers.☆62Updated last year
- High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.☆66Updated last year
- Visualize whole genome alignments as linear maps☆73Updated 9 months ago
- Protein Alignment and Detection Interface☆61Updated last year
- Automatically exported from code.google.com/p/prottest3☆37Updated 7 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated 2 months ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- Flash2 has some improvements from flash_1 including new logic from innie and outie overlaps as well as some initial steps for flash for a…☆50Updated 7 years ago
- Rank-based Gene Ontology analysis of gene expression data☆42Updated 2 years ago
- A versatile toolkit for k-mers with taxonomic information☆78Updated 11 months ago
- ☆42Updated 3 weeks ago
- new repo☆28Updated 4 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- Automatically optimise three of Velvet's assembly parameters.☆47Updated 2 years ago