josephryan / alien_indexLinks
identify potential non-animal transcripts in animal transcriptomes
☆11Updated 4 years ago
Alternatives and similar repositories for alien_index
Users that are interested in alien_index are comparing it to the libraries listed below
Sorting:
- A tool to infer species tree and phylogenetic network from multilocus data☆32Updated 5 years ago
- Code for computing various support scores for internodes☆19Updated 5 years ago
- ☆18Updated 4 years ago
- DFOIL: Introgression Testing for Five Taxa☆33Updated 4 years ago
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆11Updated 11 years ago
- ☆42Updated 2 years ago
- Automated de novo assembly of whole chloroplast genomes.☆47Updated last year
- Infer demographic history with the Moran model☆48Updated 3 months ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- ☆33Updated 4 years ago
- ☆44Updated 8 years ago
- A statistical framework for ploidy estimation using NGS short-read data☆61Updated 7 years ago
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆36Updated last year
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆37Updated last year
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 7 months ago
- Hybridization detection using phylogenetic invariants☆49Updated 11 months ago
- Helper scripts for processing and visualization of phylogenetics datasets☆30Updated last year
- A massively parallel tool for model selection and tree inference on thousands of genes☆50Updated last year
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- Tutorial about R package PopGenome☆43Updated 6 years ago
- A shiny application to visualize MCscan result☆37Updated 3 years ago
- Quantifying Introgression via Branch Lengths☆54Updated 3 years ago
- SambaR: Snp datA Management and Basic Analyses in R☆30Updated last month
- A tool to identify and annotate homoplasies on a phylogeny and sequence alignment☆20Updated 4 years ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆35Updated 2 years ago
- predicting DFE and alpha from polymorphism data☆27Updated 7 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆34Updated last year
- Interim data for the Darwin Tree of Life Project☆33Updated 5 years ago