josephryan / alien_indexLinks
identify potential non-animal transcripts in animal transcriptomes
☆11Updated 5 years ago
Alternatives and similar repositories for alien_index
Users that are interested in alien_index are comparing it to the libraries listed below
Sorting:
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆11Updated 11 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- ☆35Updated 5 years ago
- ☆18Updated 5 years ago
- Code for computing various support scores for internodes☆19Updated 5 years ago
- ☆43Updated 2 years ago
- A tool to infer species tree and phylogenetic network from multilocus data☆32Updated 5 years ago
- ☆45Updated 9 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- DFOIL: Introgression Testing for Five Taxa☆33Updated 4 years ago
- Toolkit for evolutionary analyses of linkage groups☆33Updated last year
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆36Updated 3 years ago
- STAG: Species Tree from All Genes☆34Updated 7 years ago
- ☆32Updated this week
- A shiny application to visualize MCscan result☆38Updated 3 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 11 months ago
- TGS scaffolding☆47Updated 4 years ago
- TSEBRA: Transcript Selector for BRAKER☆49Updated 2 months ago
- A tool for evaluate long-read de novo assembly results☆48Updated last year
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- finshingTool☆54Updated 9 years ago
- Genome Annotation Pipeline☆42Updated last year
- Infer demographic history with the Moran model☆51Updated 7 months ago
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆16Updated 8 years ago
- Quantifying Introgression via Branch Lengths☆56Updated 3 years ago
- Automated de novo assembly of whole chloroplast genomes.☆47Updated last year
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆38Updated last year
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆33Updated last year
- Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV☆17Updated this week
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 6 years ago