josephryan / alien_index
identify potential non-animal transcripts in animal transcriptomes
☆11Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for alien_index
- Dinoflagellate Annotation Workflow☆12Updated 2 years ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆12Updated 9 months ago
- R package to draw syntenic plots in 3 different styles☆39Updated 11 months ago
- Automatic evaluation of HGTs☆25Updated 2 months ago
- assembly evaluation tool☆34Updated 2 years ago
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆10Updated 10 years ago
- Toolkit for evolutionary analyses of linkage groups☆23Updated 4 months ago
- scripts to parse and analyse MCScanX collinearity output☆29Updated 4 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆33Updated last year
- Genome Annotation Pipeline☆32Updated 3 months ago
- ☆21Updated 10 years ago
- Likelihood-based Selective Sweep Detection☆35Updated last year
- ☆32Updated 3 years ago
- General purpose population genetics software☆12Updated 5 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆16Updated last year
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆15Updated 7 years ago
- R package for comparison of synteny conservation at the genome-wide scale.☆13Updated 5 months ago
- Code for computing various support scores for internodes☆18Updated 4 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆17Updated 5 years ago
- ☆18Updated 2 years ago
- FastK based version of Merqury☆22Updated 3 weeks ago
- Improved Phased Assembler☆28Updated 2 years ago
- A tool to identify and annotate homoplasies on a phylogeny and sequence alignment☆19Updated 3 years ago
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Updated 4 years ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆12Updated 6 months ago
- ☆26Updated 3 years ago
- Convergent substitution detection tool based on the PCOC model☆29Updated 2 years ago
- Domain based annotation of transposable elements☆19Updated last month
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆30Updated 8 months ago
- Genome alignment and synteny plots☆27Updated last year