identify potential non-animal transcripts in animal transcriptomes
☆12Nov 11, 2020Updated 5 years ago
Alternatives and similar repositories for alien_index
Users that are interested in alien_index are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆45Dec 11, 2016Updated 9 years ago
- Decomposition Into Single-COpy gene trees (DISCO) is a method for decomposing multi-copy gene-family trees while attempting to preserve o…☆11Jun 19, 2025Updated 9 months ago
- Simple tools for working with Hi-C data☆18Dec 19, 2018Updated 7 years ago
- Wormbase Build Pipeline☆22Jan 7, 2026Updated 2 months ago
- ☆33Updated this week
- A Hi-C scaffolding method☆22Dec 22, 2021Updated 4 years ago
- ☆23Feb 12, 2026Updated last month
- ☆16Feb 20, 2024Updated 2 years ago
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 5 years ago
- A package for making tree-based visualizations for embedding vectors☆10Feb 6, 2023Updated 3 years ago
- Explore spaces of phylogenetic trees☆29Aug 28, 2025Updated 6 months ago
- A pipeline for lightweight screening of Eukaryotic genomes and transcriptomes for recent HGT☆14Aug 26, 2025Updated 6 months ago
- HGTphyloDetect is a versatile toolbox to identify horizontal gene transfer (HGT) events combined with phylogenetic analysis.☆44Feb 11, 2023Updated 3 years ago
- Automatic evaluation of HGTs☆30Jan 31, 2025Updated last year
- A nextflow version of the Wochenende reference metagenome binning and visualization pipeline☆16Mar 4, 2026Updated 2 weeks ago
- PhySpeTree: an automated pipeline for reconstructing phylogenetic species trees☆14Apr 15, 2024Updated last year
- de novo assembly of RNA-seq data using ABySS☆34Mar 10, 2026Updated last week
- ☆19Nov 11, 2024Updated last year
- Novo&Stitch is a genome assembly reconciliation tool based on optical map.☆10Oct 21, 2019Updated 6 years ago
- CViTjs - Chromosome Viewing Tool. A javascript tool for quick whole-genome views of data.☆11Jan 15, 2021Updated 5 years ago
- ☆11Apr 3, 2023Updated 2 years ago
- Homebrew/science is deprecated☆11Jan 2, 2018Updated 8 years ago
- Genome Annotation Pipeline☆43Aug 20, 2024Updated last year
- DarkHorse2 source code☆10May 3, 2022Updated 3 years ago
- Compare the quality of multiple genomes, along with their annotations.☆20Updated this week
- Creates Random Coding Sequences with specified GC content and Amino Acid usage☆10Jun 21, 2022Updated 3 years ago
- Helpful handful of programs, completely open-source and free☆11Mar 26, 2021Updated 4 years ago
- Tutorials for bioinformatics and data analysis related to landscape genomics☆30Jan 19, 2019Updated 7 years ago
- ☆13Apr 24, 2023Updated 2 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Feb 23, 2021Updated 5 years ago
- What the Package Does (One Line, Title Case)☆13Nov 17, 2019Updated 6 years ago
- SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…☆12May 7, 2023Updated 2 years ago
- Find Co-Abundant Groups of Genes☆11Aug 3, 2020Updated 5 years ago
- Phylogenetic profiling with orthology data☆13Oct 10, 2025Updated 5 months ago
- An efficient way to convert gff3 annotation files into EMBL format ready to submit.☆67Jul 31, 2025Updated 7 months ago
- RRSelection: A linkage disequilibrium method to detect selection region across population VCF☆14Feb 11, 2019Updated 7 years ago
- Phylogenetic tools for Eco-phylogenetics☆14Oct 10, 2024Updated last year
- ☆11May 10, 2025Updated 10 months ago
- shell tools for processing phylogenetic trees☆119Aug 30, 2022Updated 3 years ago