Trinotate / Trinotate
Trinotate source code
☆77Updated 6 months ago
Related projects: ⓘ
- A set of functions to visualise genotypes based on a VCF☆83Updated 2 years ago
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆96Updated 8 months ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆68Updated 2 years ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆92Updated 8 months ago
- Same species annotation lift over pipeline.☆95Updated last year
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles.☆86Updated 2 months ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆51Updated last year
- A collection of scripts for processing fastq files in ways to improve de novo transcriptome assemblies, and for evaluating those assembli…☆47Updated 6 months ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆88Updated 2 years ago
- web documentation for Trinotate☆47Updated last year
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆135Updated 4 months ago
- PacBio Assembly Tool Suite: Reads in ⇨ Assembly out☆113Updated 4 years ago
- ☆80Updated this week
- Assembly statistic visualisation☆88Updated 8 months ago
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆104Updated last year
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 3 years ago
- Dfam Transposable Element Tools Docker container.☆82Updated this week
- 10x Genomics Linked-Read Diploid De Novo Assembler☆64Updated 5 years ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆125Updated last year
- ☆110Updated 2 years ago
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated last year
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆105Updated 2 weeks ago
- accurate LiftOver tool for new genome assemblies☆106Updated last month
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated 9 months ago
- ☆184Updated last month
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆111Updated 3 years ago
- ShortStack: Comprehensive annotation and quantification of small RNA genes☆88Updated this week
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆89Updated last week
- Tools for working with second gen assemblies, fasta sequences, etc☆92Updated 8 years ago
- Match up paired end fastq files quickly and efficiently.☆139Updated 3 months ago