Trinotate / Trinotate
Trinotate source code
☆80Updated last year
Alternatives and similar repositories for Trinotate:
Users that are interested in Trinotate are comparing it to the libraries listed below
- Software for clustering de novo assembled transcripts and counting overlapping reads☆71Updated 3 years ago
- web documentation for Trinotate☆48Updated 2 years ago
- PacBio Assembly Tool Suite: Reads in ⇨ Assembly out☆116Updated 4 years ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆97Updated last year
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated last month
- Python programs for processing GFF3 files☆95Updated last year
- ☆77Updated 4 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆90Updated 3 years ago
- Dfam Transposable Element Tools Docker container.☆90Updated last month
- FunGAP: fungal Genome Annotation Pipeline☆111Updated last year
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆96Updated 3 weeks ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- accurate LiftOver tool for new genome assemblies☆125Updated 8 months ago
- Development version of Easyfig☆93Updated last year
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆101Updated this week
- ShortStack: Comprehensive annotation and quantification of small RNA genes☆91Updated 5 months ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆101Updated last year
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆107Updated last year
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆184Updated 11 months ago
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆116Updated 4 years ago
- A pipeline to generate a phylogenetic tree from huge SNP data☆87Updated last year
- Same species annotation lift over pipeline.☆97Updated last year
- List of genome assembly tools☆65Updated 2 weeks ago
- Match up paired end fastq files quickly and efficiently.☆148Updated 10 months ago
- Ultra-fast preprocessing and quality control for long-read sequencing data☆122Updated 2 months ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆57Updated last year
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated last year
- FEELnc : FlExible Extraction of LncRNA☆87Updated 7 months ago
- A set of functions to visualise genotypes based on a VCF☆85Updated 3 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago