Trinotate source code
☆85Mar 14, 2024Updated 2 years ago
Alternatives and similar repositories for Trinotate
Users that are interested in Trinotate are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- web documentation for Trinotate☆48Jan 23, 2023Updated 3 years ago
- Trinity RNA-Seq de novo transcriptome assembly☆894Apr 23, 2026Updated 2 months ago
- Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved …☆55May 11, 2020Updated 6 years ago
- TransDecoder source☆307Mar 22, 2026Updated 3 months ago
- source code for EVM☆126Nov 29, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Consensus genome annotation using OMA☆32Jan 14, 2026Updated 5 months ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆78Feb 11, 2022Updated 4 years ago
- de novo assembly of RNA-seq data using ABySS☆33Mar 10, 2026Updated 3 months ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated last year
- source code for HpcGridRunner☆16Aug 2, 2021Updated 4 years ago
- Error correction for Illumina RNA-seq reads☆66Jan 4, 2026Updated 6 months ago
- Annotate DNA sequences for Gene Ontology terms☆40Sep 11, 2025Updated 9 months ago
- A genome completeness evaluation tool based on miniprot☆250Jun 20, 2026Updated 2 weeks ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆149Apr 13, 2026Updated 2 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Gmove is a gene prediction tool☆21Oct 9, 2024Updated last year
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆61Oct 27, 2023Updated 2 years ago
- a fork of the gap-closing pipeline PBJelly☆15Jan 7, 2019Updated 7 years ago
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆24Mar 26, 2026Updated 3 months ago
- A complete telomere-to-telomere assembly of sheep: T2T-sheep1.0☆21Nov 2, 2024Updated last year
- Fast genome analysis from unassembled short reads☆323Apr 8, 2024Updated 2 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆14Jun 22, 2016Updated 10 years ago
- ☆19Jun 28, 2026Updated last week
- Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…☆111Jan 30, 2026Updated 5 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.☆11Feb 25, 2021Updated 5 years ago
- De novo transcriptome assembler for short reads☆65May 31, 2026Updated last month
- Integrated toolkit for analysis and evaluation of annotated genomes☆25Aug 1, 2025Updated 11 months ago
- The 3rd incarnation of the Wise package for sequence analysis☆23Jun 19, 2014Updated 12 years ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆212Nov 18, 2022Updated 3 years ago
- ☆93Jun 26, 2026Updated last week
- An integrated high performance bioinformatics toolkit☆23Apr 24, 2019Updated 7 years ago
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆296May 28, 2026Updated last month
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆124Apr 7, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆580May 18, 2026Updated last month
- DNA assembler developed on FER (Croatia), RBI (Croatia) and GIS (Singapore)☆18Jan 18, 2016Updated 10 years ago
- ☆21Feb 15, 2025Updated last year
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆489Updated this week
- Tools for fast and flexible genome assembly scaffolding and improvement☆567Feb 14, 2024Updated 2 years ago
- Genome annotation with AUGUSTUS☆335May 30, 2026Updated last month
- ☆13Oct 30, 2019Updated 6 years ago