aquaskyline / SOAPdenovo-TransLinks
SOAPdenovo-Trans, a de novo transcriptome assembler designed specifically for RNA-Seq. We evaluated its performance on transcriptome datasets from rice and mouse.
☆36Updated 2 years ago
Alternatives and similar repositories for SOAPdenovo-Trans
Users that are interested in SOAPdenovo-Trans are comparing it to the libraries listed below
Sorting:
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- de novo assembly of RNA-seq data using ABySS☆34Updated 2 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 7 months ago
- High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.☆67Updated 2 years ago
- De novo transcriptome assembler for short reads☆64Updated 7 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- ☆35Updated 2 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆76Updated 3 years ago
- PHAST☆77Updated this week
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆91Updated 5 months ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆76Updated last year
- Error correction for Illumina RNA-seq reads☆67Updated last year
- parallelized blat with multi-threads support☆53Updated 11 months ago
- my bin directory☆45Updated 3 months ago
- A catalogue of available long read sequencing data analysis tools☆83Updated 3 months ago
- PrimerServer2: a high-throughput primer design and specificity-checking platform☆80Updated 3 years ago
- Helper scripts for biological data processing from Sentieon☆64Updated 2 months ago
- ☆47Updated 2 weeks ago
- Long Reads Annotation pipeline☆72Updated 3 years ago
- A fork of exonerate: a generic tool for sequence alignment☆71Updated 2 years ago
- Get, parse, and extract information from the SRA metadata files☆45Updated 3 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆35Updated last year
- FEELnc : FlExible Extraction of LncRNA☆92Updated 5 months ago
- A package for designing compact and comprehensive capture probe sets.☆92Updated last year
- Automatically optimise three of Velvet's assembly parameters.☆48Updated 3 years ago
- Automatically exported from code.google.com/p/prottest3☆38Updated 7 years ago
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Updated 8 years ago
- web documentation for Trinotate☆48Updated 2 years ago
- GenMap - Fast and Exact Computation of Genome Mappability☆113Updated last year