jleluyer / rna-seq_denovo_workflowView external linksLinks
Pipeline for transcriptome de novo assembly
☆12Mar 1, 2018Updated 7 years ago
Alternatives and similar repositories for rna-seq_denovo_workflow
Users that are interested in rna-seq_denovo_workflow are comparing it to the libraries listed below
Sorting:
- Genetic Map Comparison☆20Nov 10, 2022Updated 3 years ago
- Transcripts annotation and GO enrichment Fisher tests☆27Apr 28, 2023Updated 2 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆14Jun 22, 2016Updated 9 years ago
- eDNA metabarcoding pipeline☆44Jan 22, 2026Updated 3 weeks ago
- ☆16Dec 25, 2024Updated last year
- RADseq workflow using STACKS☆61Jan 29, 2026Updated 2 weeks ago
- A practical guide to build de-novo transcriptome assemblies for non-model organisms (described in Montero-Mendieta et al. 2017).☆28Jul 11, 2017Updated 8 years ago
- This python script can be used to detect Whole-genome duplication (WGD) with the dS based method.☆25Feb 22, 2019Updated 6 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆26Nov 14, 2025Updated 3 months ago
- Toolkit for evolutionary analyses of linkage groups☆33Jul 17, 2024Updated last year
- transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation☆27Feb 28, 2024Updated last year
- MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional ba…☆12Jul 11, 2025Updated 7 months ago
- HiFi-SR is a Python-based pipeline for the detection of plant mitochondrial structural rearrangements based on the mapping of PacBio high…☆10Apr 15, 2025Updated 10 months ago
- shifts hg19/38 genomic position for feasible input format.☆12Jun 8, 2023Updated 2 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Mar 5, 2018Updated 7 years ago
- ☆37Feb 22, 2023Updated 2 years ago
- Gene Family Annotation Workflow☆11Mar 26, 2024Updated last year
- A python framework for inferring demography from tracts of identity by state as reported in PLoS Genetics by Harris and Nielsen (2013)☆15Aug 1, 2013Updated 12 years ago
- MegaSSR is a robust online server that identifies Simple Sequence Repeats (SSR) and enables the design of SSR markers in high-throughput …☆11Nov 25, 2024Updated last year
- de novo assembly of RNA-seq data using ABySS☆34Jul 21, 2023Updated 2 years ago
- Pipeline for major biological analyses.☆36Mar 30, 2022Updated 3 years ago
- ☆13Nov 13, 2023Updated 2 years ago
- Supporting information of 'Single-cell RNA sequencing of a European and an African lymphoblastoid cell line'☆10Feb 27, 2020Updated 5 years ago
- ☆41May 19, 2025Updated 8 months ago
- ☆16Jan 14, 2026Updated last month
- Scripts☆10Jun 29, 2016Updated 9 years ago
- This is a tool to estimate pairwise relatedness from ancient DNA, taking in account contamination, ROH, ascertainment bias.☆14Aug 6, 2024Updated last year
- Easy353 is a tool for recovering Angiosperms353 gene set.☆11Jul 29, 2025Updated 6 months ago
- ☆11Dec 1, 2020Updated 5 years ago
- Filters for Next Generation Sequencing☆12Oct 31, 2024Updated last year
- Bioinformatics / Explore oligonucleotide composition similarity between assembly contigs or scaffolds to detect contaminant DNA.☆12Feb 27, 2019Updated 6 years ago
- Strand and WGD aware syntenic gene identification☆15Oct 16, 2025Updated 4 months ago
- This repo is archived, the these workflows are still available in the GATK repository under the scripts directory. The workflows are also…☆11Mar 9, 2020Updated 5 years ago
- An ontology database for crops' traits with their variables☆21Apr 9, 2025Updated 10 months ago
- detectRuns: a R Package for Runs of Homozygosity and Runs of Heterozygosity☆12May 25, 2023Updated 2 years ago
- ☆14Oct 27, 2025Updated 3 months ago
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated last year
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated last year
- m(6)A methylation analysis☆10Mar 9, 2019Updated 6 years ago