jleluyer / rna-seq_denovo_workflow
Pipeline for transcriptome de novo assembly
☆12Updated 7 years ago
Alternatives and similar repositories for rna-seq_denovo_workflow:
Users that are interested in rna-seq_denovo_workflow are comparing it to the libraries listed below
- Pan-genome Construction and Population Structure Variation Calling pipeline☆38Updated 7 months ago
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- read and analyse RepeatMasker output☆24Updated last year
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 4 years ago
- Scripts and procedures for detecting positively selected genes and codons in primates☆21Updated 4 years ago
- ☆21Updated 5 years ago
- scripts for sequence and feature conversion, annotation, analysis ...☆27Updated last month
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- A pipeline for isoseq☆23Updated 6 years ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- ☆24Updated 2 years ago
- The repository for codes developed to generated the Maize NC358 assemblies and analyses.☆10Updated 5 years ago
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- BITACORA: A Bioinformatics tool for gene family annotation☆43Updated last year
- A tool for performing collinearity-incorporating homology inference☆31Updated last year
- Genome Annotation Pipeline☆35Updated 8 months ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆54Updated last week
- ☆24Updated 2 years ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆26Updated 6 years ago
- R package to draw syntenic plots in 3 different styles☆40Updated last year
- Conditional Reciprocal Best Blast☆42Updated 8 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆31Updated 7 months ago
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆18Updated 2 years ago
- ☆25Updated 2 months ago
- ☆32Updated 4 years ago
- ☆27Updated 4 months ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- Transcripts annotation and GO enrichment Fisher tests☆26Updated 2 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆55Updated 2 years ago
- ☆13Updated 5 years ago