Alternatives and similar repositories for experimental-design

Users that are interested in experimental-design are comparing it to the libraries listed below

• bioinformatics-core-shared-training / cruk-summer-school-2018
  Summer school course materials collection
  ☆27Updated 7 years ago
• bioinformatics-core-shared-training / docker-4-bioinformatics
  Short Course to get Bioinformaticians at CRUK-CI up-to-speed on Docker
  ☆12Updated 9 years ago
• elimereu / matchSCore2
  ☆55Updated 5 years ago
• oganm / homologene
  An r package that works as a wrapper to homologene
  ☆47Updated 2 years ago
• BIMIB-DISCo / TRONCO
  Repository of the TRanslational ONCOlogy library, which includes various algorithms (such as CAPRESE and CAPRI) and the Pipeline for Canc…
  ☆30Updated 2 months ago
• zhiyhu / scFT-paper
  Z Hu et al. The repertoire of serous ovarian cancer non-genetic heterogeneity revealed by single-cell sequencing of normal fallopian tube…
  ☆13Updated 5 years ago
• kevinblighe / scDataviz
  scDataviz: single cell dataviz and downstream analyses
  ☆65Updated 4 years ago
• waldronlab / MultiAssayWorkshop
  Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment
  ☆24Updated 5 months ago
• SydneyBioX / scMerge
  Statistical approach for removing unwanted variation from multiple single-cell datasets
  ☆68Updated last year
• jokergoo / simplifyEnrichment
  Simplify functional enrichment results
  ☆121Updated last year
• simonvh / bioinfosummer
  Tutorial for AMSI BioInfoSummer 2018
  ☆30Updated 7 years ago
• davidrequena / DESeq2
  Guide for the Differential Expression Analysis of RNAseq data using DESeq2
  ☆23Updated 7 years ago
• romanhaa / cerebroApp
  R package containing the Cerebro application.
  ☆40Updated 4 years ago
• waldronlab / HGNChelper
  Identify and correct invalid gene symbols
  ☆60Updated last year
• hbc / bcbioSingleCell
  R package for bcbio single-cell RNA-seq analysis.
  ☆30Updated last year
• Papatheodorou-Group / CATD_snakemake
  Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…
  ☆15Updated 8 months ago
• Neurosurgery-Brain-Tumor-Center-DiazLab / CONICS
  CONICS: COpy-Number analysis In single-Cell RNA-Sequencing
  ☆75Updated 2 years ago
• meltonlab / scbeta_indrops
  Analysis of single cell RNA-Seq data from Veres et al.
  ☆12Updated 6 years ago
• andymckenzie / DGCA
  Differential Gene Correlation Analysis
  ☆46Updated last year
• plger / pipeComp
  A R framework for pipeline benchmarking, with application to single-cell RNAseq
  ☆42Updated 4 years ago
• kevinblighe / CorLevelPlot
  Visualise correlation results and test significancies of these
  ☆23Updated 5 years ago
• PeeperLab / Rtoolbox
  Toolbox with R scripts
  ☆38Updated 7 years ago
• MangiolaLaboratory / sccomp
  Bayesian mixed-effect model to test differences in cell type proportions from single-cell data, in R
  ☆117Updated last week
• fpbarthel / GLASS
  GLASS consortium
  ☆42Updated 5 years ago
• metaOmics / metaOmics
  Shiny GUI application for genomics meta-analysis
  ☆22Updated 5 years ago
• DavisLaboratory / singscore
  An R/Bioconductor package that implements a single-sample molecular phenotyping approach
  ☆46Updated 2 months ago
• jsschrepping / r_docker
  Docker container for genomics analyses in R.
  ☆26Updated last year
• ebi-gene-expression-group / r-seurat-scripts
  Scripts to install as a Bioconda package for making workflows
  ☆18Updated last year
• VCCRI / Sierra
  Discover differential transcript usage from polyA-captured single cell RNA-seq data
  ☆53Updated 2 years ago
• wmacnair / SampleQC
  Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data
  ☆38Updated 3 years ago