Alternatives and similar repositories for NGS_Workflow

Users that are interested in NGS_Workflow are comparing it to the libraries listed below

• xuzhougeng / RNA-seq-downstream-analysis
  Arabidopsis RNA_-seq downstream analysis shiny app
  ☆30Updated 5 years ago
• scottzijiezhang / m6A-seq_analysis_workflow
  A pipeline to process m6A-seq data and down stream analysis.
  ☆44Updated 4 years ago
• olarerin / metaPlotR
  A Perl/R pipeline for plotting metagenes
  ☆37Updated 3 years ago
• maxsonBraunLab / cutTag-pipeline
  Pipeline for Cut&Tag analysis
  ☆21Updated last month
• menghaowei / ngstools
  My own tools code for NGS data analysis (Next Generation Sequencing)
  ☆30Updated 5 years ago
• SGDDNB / translational_regulation
  Detection of differential translated genes using Ribo-seq
  ☆15Updated 4 years ago
• yezhengSTAT / CUTTag_tutorial
  Tutorial Website
  ☆59Updated 4 years ago
• 3UTR / DaPars2
  Dynamics analysis of Alternative PolyAdenylation from RNA-seq
  ☆59Updated last year
• deLaatLab / pipe4C
  4C-seq processing pipeline
  ☆23Updated 2 months ago
• tzhu-bio / cisDynet
  An integrated platform for modeling gene-regulatory dynamics and networks
  ☆31Updated 9 months ago
• ay-lab / ATACProc
  ATAC-seq processing pipeline
  ☆33Updated 3 years ago
• LappalainenLab / lorals_paper_code
  ☆25Updated 3 years ago
• twlab / TEProf2Paper
  TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data
  ☆23Updated 2 years ago
• junjunlab / RiboProfiler
  Integrating Ribo-SEQ Upstream and Downstream Analysis
  ☆11Updated 7 months ago
• marvin-jens / find_circ
  tools to find circRNAs in RNA-seq data
  ☆42Updated 7 years ago
• junjunlab / BioSeqUtils
  Extract Sequence from Genome According to Annotation File
  ☆33Updated last month
• xuzhougeng / R-ChIP-data-analysis
  ☆50Updated 6 years ago
• dekkerlab / cworld-dekker
  perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)
  ☆66Updated 5 years ago
• shizhuoxing / scISA-Tools
  single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…
  ☆24Updated 9 months ago
• petitmingchang / TO-GCN
  Pipeline of time-ordered gene coexpression network (TO-GCN) construction from three-dimensional (gene expression, condition, and time) da…
  ☆48Updated last year
• mcgilldinglab / MATES
  A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data
  ☆27Updated last month
• YaoLab-Bioinfo / shinyChromosome
  an R/Shiny application for interactive creation of non-circular plots of whole genomes
  ☆45Updated 2 years ago
• liucongcas / GLORI-tools
  bioinformatic pipeline for GLORI
  ☆20Updated 11 months ago
• junjunlab / GetTsite
  extract gene TSS/TES site form gencode/ensembl/gencode database GTF file and export bed format file.
  ☆10Updated 3 years ago
• ChenFengling / HiCpipe
  an efficient Hi-C data processing pipeline
  ☆17Updated last year
• junjunlab / ggChIPvis
  Profile and Heatmap Visualization by Using ggplot2 and grid
  ☆10Updated last year
• shawnzhangyx / cvdc_scripts
  scripts for analyzing the CVDC data.
  ☆18Updated 5 years ago
• kernco / functional-annotation
  Pipeline for functional annotation of genomes by integrating data from RNA-seq, ChIP-seq, DNase-seq, etc.
  ☆25Updated 3 years ago
• markowetzlab / Drews2022_CIN_Compendium
  Main repository for Drews et al. (Nature, 2022)
  ☆40Updated last year
• stormlovetao / eQTLQC
  ☆26Updated 4 years ago