yuanlizhanshi / NGS_Workflow

Related projects ⓘ

Alternatives and complementary repositories for NGS_Workflow

• xuzhougeng / RNA-seq-downstream-analysis
  Arabidopsis RNA_-seq downstream analysis shiny app
  ☆31Updated 5 years ago
• junjunlab / BioSeqUtils
  Extract Sequence from Genome According to Annotation File
  ☆29Updated last week
• yezhengSTAT / CUTTag_tutorial
  Tutorial Website
  ☆53Updated 3 years ago
• tzhu-bio / cisDynet
  An integrated platform for modeling gene-regulatory dynamics and networks
  ☆28Updated 4 months ago
• shawnzhangyx / cvdc_scripts
  scripts for analyzing the CVDC data.
  ☆17Updated 4 years ago
• kernco / functional-annotation
  Pipeline for functional annotation of genomes by integrating data from RNA-seq, ChIP-seq, DNase-seq, etc.
  ☆22Updated 2 years ago
• olarerin / metaPlotR
  A Perl/R pipeline for plotting metagenes
  ☆35Updated 3 years ago
• scottzijiezhang / m6A-seq_analysis_workflow
  A pipeline to process m6A-seq data and down stream analysis.
  ☆43Updated 4 years ago
• dekkerlab / cworld-dekker
  perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)
  ☆64Updated 5 years ago
• YaoLab-Bioinfo / shinyChromosome
  an R/Shiny application for interactive creation of non-circular plots of whole genomes
  ☆45Updated last year
• ay-lab / ATACProc
  ATAC-seq processing pipeline
  ☆31Updated 2 years ago
• benben-miao / TOmicsVis
  Transcriptomics Visualization R package.
  ☆58Updated 10 months ago
• FenyoLab / L1EM
  Estimate locus specific human LINE-1 expression.
  ☆32Updated 2 years ago
• xuzhougeng / R-ChIP-data-analysis
  ☆51Updated 6 years ago
• junjunlab / GetTransTool
  Extract longest transcript or longest CDS transcript from GTF annotation file or gencode transcripts fasta file.
  ☆19Updated 2 years ago
• RitchieLabIGH / IRFinder
  ☆13Updated last year
• jianhong / trackViewer
  A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot
  ☆66Updated 2 weeks ago
• mcgilldinglab / MATES
  A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data
  ☆16Updated this week
• menghaowei / ngstools
  My own tools code for NGS data analysis (Next Generation Sequencing)
  ☆29Updated 5 years ago
• xryanglab / RiboCode
  release version
  ☆48Updated 2 years ago
• shimlab / BLAZE
  SingleCell Nanopore sequencing data analysis
  ☆52Updated last month
• BioinfoUNIBA / REDItools2
  ☆53Updated 3 years ago
• marvin-jens / find_circ
  tools to find circRNAs in RNA-seq data
  ☆40Updated 7 years ago
• tjbencomo / ngs-pipeline
  Pipeline for Somatic Variant Calling with WES and WGS data
  ☆20Updated 6 months ago
• 3UTR / DaPars2
  Dynamics analysis of Alternative PolyAdenylation from RNA-seq
  ☆50Updated last year
• stjude / ROSE
  ROSE: RANK ORDERING OF SUPER-ENHANCERS
  ☆43Updated 3 months ago
• pk7zuva / Circle_finder
  Micro DNA identification
  ☆22Updated 3 years ago
• gxiaolab / REDITs
  RNA editing tests
  ☆16Updated 4 years ago
• ZhaiLab-SUSTech / snuupy
  single-nucleus nanopore reads processing pipeline
  ☆15Updated last year
• iprada / Circle-Map
  A method for circular DNA detection based on probabilistic mapping of ultrashort reads
  ☆61Updated 4 months ago