Alternatives and similar repositories for BipEx

Users that are interested in BipEx are comparing it to the libraries listed below

• yiminghu / post-GWAS-pipeline
  A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data
  ☆29Updated 3 years ago
• bhattacharya-a-bt / isotwas
  ☆23Updated last month
• getian107 / SuSiEx
  Cross-population fine-mapping
  ☆37Updated 9 months ago
• mglev1n / locusplotr
  Create Regional Association Plots
  ☆12Updated 2 weeks ago
• amf71 / ECLIPSE
  ☆11Updated 2 years ago
• pablo-gar / somatic_mutations_GTEx
  Methods and analysis for Garcia-Nieto, et al. Somatic mutations
  ☆16Updated 5 years ago
• naim-panjwani / LocusFocus
  Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)
  ☆10Updated 8 months ago
• elizabethdorans / pgBoost
  ☆15Updated 3 weeks ago
• xihaoli / MetaSTAAR
  An R package for performing MetaSTAAR procedure in whole-genome sequencing studies
  ☆24Updated 10 months ago
• pgxcentre / region-plot
  A tool to plot significant regions of GWAS
  ☆29Updated 2 years ago
• ZikunY / CARMA
  GWAS genetics Fine-mapping method
  ☆25Updated 11 months ago
• FinucaneLab / fine-mapping-inf
  Fine-mapping with infinitesimal effects
  ☆17Updated 3 months ago
• gusevlab / stratAS
  🌓 Allele specific analyses across cell states and conditions
  ☆10Updated 2 years ago
• wuyangf7 / OPERA
  This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…
  ☆37Updated 11 months ago
• deWitLab / peakC
  Peak calling for 4C data
  ☆12Updated 7 years ago
• yupenghe / encode_dna_dynamics
  Custom scripts used in "Spatiotemporal DNA Methylome Dynamics of the Developing Mammalian Fetus"
  ☆11Updated 4 years ago
• statgen / pheweb-rg-pipeline
  Genetic correlation calculation pipeline via summary statistics for PheWeb
  ☆13Updated 6 years ago
• annalam / cfdna-wgs-manuscript-code
  Code used to generate the results in "Somatic chronology of treatment-resistant prostate cancer via deep whole-genome ctDNA sequencing"
  ☆14Updated last year
• opain / Calculating-FUSION-TWAS-weights-pipeline
  This is a pipeline for calculating weights for TWAS
  ☆32Updated 3 years ago
• DavidQuigley / WCDT_WGBS
  West Coast Dream Team Whole Genome Bisulfite Sequencing
  ☆15Updated 5 years ago
• RajLabMSSM / ggLocusZoom
  Create LocusZoom-style plots in R.
  ☆22Updated 2 years ago
• lilab-bioinfo / xQTLbiolinks
  xQTLbiolinks: an R package for integrative analysis with xQTL data
  ☆17Updated last year
• yuanzhongshang / GIFT
  ☆20Updated 10 months ago
• jianyangqt / osca
  ☆20Updated 2 years ago
• navinlabcode / ACT_paper
  Scripts used for the ACT paper
  ☆12Updated 4 years ago
• EMO-Consortium / GeneticCorrelation
  ☆12Updated last year
• iaaaka / evo-devo
  ☆12Updated 4 years ago
• AlexandrovLab / SigProfilerTopography
  SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…
  ☆20Updated last month
• NYU-BFX / RNA-Seq_Standard
  ☆11Updated 7 years ago
• hakyimlab / summary-gwas-imputation
  harmonization, liftover, and imputation of summary statistics from GWAS
  ☆33Updated 5 years ago