Alternatives and similar repositories for DECoNT

Users that are interested in DECoNT are comparing it to the libraries listed below

• Xinglab / lr2rmats
  Long read to rMATS
  ☆32Updated 2 years ago
• mhalushka / miRge3.0
  Comprehensive analysis of small RNA sequencing data
  ☆34Updated 8 months ago
• dnaase / Bis-tools
  A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…
  ☆32Updated 4 years ago
• markowetzlab / Drews2022_CIN_Compendium
  Main repository for Drews et al. (Nature, 2022)
  ☆42Updated 2 years ago
• broadinstitute / longbow
  Annotation and segmentation of MAS-seq data
  ☆20Updated 2 years ago
• oicr-gsi / sequenza
  Workflow for Sequenza, cellularity and ploidy
  ☆26Updated 5 months ago
• alexchwong / SpliceWiz
  SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.
  ☆21Updated last month
• QingliGuo / FFPEsig
  Codes and Data for FFPEsig manuscript
  ☆17Updated 2 years ago
• MarWoes / wg-blimp
  wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data
  ☆29Updated 3 years ago
• ShujiaHuang / qmplot
  A Python package for creating high-quality manhattan and Q-Q plots from GWAS results.
  ☆48Updated 2 years ago
• jason-weirather / hla-polysolver
  Fork of the Polysolver project
  ☆33Updated 6 years ago
• parklab / MuSiCal
  A comprehensive toolkit for mutational signature analysis
  ☆41Updated last year
• parklab / HiNT
  HiC for copy Number variation and Translocation detection
  ☆41Updated 4 years ago
• GuanLab / FastClone_GuanLab
  ☆16Updated 4 years ago
• hr1912 / TreeExp
  TreeExp 2.0: Toolbox for analyzing expression evolution based on RNA-seq count data
  ☆15Updated 6 years ago
• macarthur-lab / tx_annotation
  Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…
  ☆34Updated 3 years ago
• fanyucai1 / TMB
  肿瘤突变负荷学习笔记（tumor mutation burden）
  ☆16Updated 6 years ago
• ENCODE-DCC / mirna-seq-pipeline
  ☆18Updated 4 years ago
• KhiabanianLab / All-FIT
  All-FIT - Allele-Frequency-based Imputation of Tumor Purity
  ☆18Updated 6 years ago
• WGLab / LIQA
  Long-read Isoform Quantification and Analysis
  ☆38Updated 10 months ago
• amf71 / ECLIPSE
  ☆11Updated 2 years ago
• sdchandra / CNAclinic
  ☆26Updated last year
• LosicLab / starchip
  Detection of Circular RNA and Fusions from RNA-Seq
  ☆32Updated 7 years ago
• ndbrown6 / MSK-GRAIL-TECHVAL
  High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants
  ☆22Updated 5 years ago
• mhguo1 / TRAPD
  Burden testing against public controls
  ☆50Updated last year
• etal / cnvkit-examples
  Example datasets for CNVkit (http://github.com/etal/cnvkit)
  ☆23Updated 7 years ago
• AmpliconSuite / AmpliconReconstructorOM
  Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data
  ☆19Updated 2 years ago
• Xinglab / rMATS-long
  ☆34Updated 2 months ago
• DKFZ-ODCF / ACEseqWorkflow
  Allele-specific copy number estimation with whole genome sequencing
  ☆23Updated 2 years ago
• cancer-genomics / reproduce_lucas_wflow
  ☆31Updated last year