salbrec / seqQscorerLinks
☆22Updated 2 months ago
Alternatives and similar repositories for seqQscorer
Users that are interested in seqQscorer are comparing it to the libraries listed below
Sorting:
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16Updated 2 years ago
- Comprehensive Human Expressed SequenceS☆17Updated this week
- Accompanying analysis code for the FRASER manuscript☆26Updated 4 years ago
- Winter 2021, GGG 298 - Tools for Data Intensive Research - UC Davis☆12Updated 4 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 3 years ago
- Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.☆12Updated 2 years ago
- Chromatin ACcessibility and Transcriptomics Unifying Software☆16Updated 8 months ago
- The official repository for the deepSNV bioconductor packages. Branch master tracks the official Bioconductor development branch.☆16Updated 3 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆12Updated 5 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆28Updated 3 years ago
- Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads☆18Updated last year
- NASQAR: A web-based platform for High-throughput sequencing data analysis and visualization☆32Updated 5 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 2 years ago
- A comprehensive gene set function enrichment tool for multiple species.☆13Updated 5 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated last year
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated last year
- ☆12Updated last year
- Network Visualization using both GUI and Programming☆28Updated last month
- Snakemake workflow for neoantigen prediction☆14Updated last year
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆18Updated last year
- This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…☆12Updated 5 years ago
- Comprehensive and scalable differential splicing analyses☆17Updated 4 months ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆18Updated 2 months ago
- An alignment and analysis pipeline for Ribosome Profiling and RNA-seq data☆13Updated last year
- ☆17Updated 3 years ago
- INTERSTELLAR: Interpretation, scalable transformation, and emulation of large-scale sequencing reads☆18Updated last year
- Versatile FASTA/FASTQ demultiplexer.☆33Updated last year
- TFregulomeR reveals transcription factors’ context-specific features and functions☆16Updated 3 years ago