salbrec / seqQscorerLinks
☆22Updated 4 months ago
Alternatives and similar repositories for seqQscorer
Users that are interested in seqQscorer are comparing it to the libraries listed below
Sorting:
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆41Updated 3 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆29Updated 4 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 7 years ago
- This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…☆13Updated 6 years ago
- Accompanying analysis code for the FRASER manuscript☆25Updated 5 years ago
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16Updated 2 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆20Updated 3 years ago
- ORF Quantification pipeline for Alternative Splicing☆16Updated 4 years ago
- Comprehensive Human Expressed SequenceS☆19Updated 6 months ago
- Comprehensive and scalable differential splicing analyses☆18Updated last month
- Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads☆16Updated 2 years ago
- Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.☆13Updated 2 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Updated 4 years ago
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆28Updated last year
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆20Updated 3 years ago
- ☆22Updated last year
- ☆23Updated 4 years ago
- Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.☆26Updated 3 years ago
- Explore the cancer relevance of your gene list☆52Updated last month
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆21Updated 3 months ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- ☆10Updated 10 months ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Updated 6 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Updated 6 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Updated 6 years ago
- ☆12Updated 2 years ago
- Winter 2021, GGG 298 - Tools for Data Intensive Research - UC Davis☆12Updated 4 years ago
- This repository aims to serve as an index of the work described at Salmen & De Jonghe et. al 2022☆24Updated 3 years ago
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Updated 2 years ago
- A user-friendly Python toolkit, which provides a comprehensive pipeline to easily explore the cohort-based mutational characterization fo…☆21Updated 3 years ago