mxwang66 / depthpredLinks
A Deep Learning Model for Predicting Next-Generation Sequencing Depth from DNA Sequence
☆23Updated 4 years ago
Alternatives and similar repositories for depthpred
Users that are interested in depthpred are comparing it to the libraries listed below
Sorting:
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆72Updated 2 years ago
- Predicting gene expression levels from genomic sequences☆54Updated 5 years ago
- ExplaiNN: interpretable and transparent neural networks for genomics☆49Updated 10 months ago
- ☆34Updated 3 years ago
- code to run sei and obtain sei and sequence class predictions☆111Updated 3 years ago
- ☆87Updated 2 months ago
- Elucidating the Utility of Genomic Elements with Neural Nets☆69Updated last year
- ☆34Updated last year
- A set of Shiny apps to provide interactive enrichment analysis and exploration of results.☆31Updated 3 weeks ago
- Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.☆84Updated 4 years ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆82Updated last year
- Modelling insertion efficiency for Prime Insertion Experiments☆13Updated last year
- SpliceTransformer(SpTransformer) is a deep learning tool to predict tissue specific splicing site from pre-mRNA sequence☆31Updated last year
- Analysis pipeline for the GUIDE-seq assay.☆29Updated 6 months ago
- A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence☆33Updated 2 weeks ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆90Updated 3 months ago
- APA Regression Net - Predict and Engineer Alternative Polyadenylation☆40Updated 4 years ago
- Circular RNA Identification for Nanopore Sequencing☆22Updated last year
- Species-aware DNA language models capture regulatory elements and their evolution☆27Updated 2 years ago
- G4Hunter (2012_2015)- IECB - Bordeaux☆17Updated 5 years ago
- Tool package to perform in-silico CRISPR analysis and assessment☆34Updated 2 months ago
- pyJASPAR: A Pythonic interface to JASPAR transcription factor motifs☆34Updated 3 months ago
- off-targeting assessment of Cas9 gRNAs☆15Updated 4 years ago
- Computational framework to identify promoter sequences from RNA-seq datasets☆11Updated 2 years ago
- Saluki, a method to predict mRNA half-lives from sequence☆27Updated 3 years ago
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆18Updated 6 months ago
- CHANGE-seq analysis pipeline☆11Updated last month
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆11Updated last year
- ☆72Updated 2 months ago
- ☆25Updated 4 months ago