astheeggeggs / UKBB_ldsc_r2
genetic correlation between phenotypes in the UK biobank
☆13Updated 6 months ago
Related projects: ⓘ
- Primo☆16Updated 3 years ago
- An R package for generating comparative regional association plots☆18Updated 4 years ago
- Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis☆16Updated 4 months ago
- Estimate genetic correlation using predicted expression☆19Updated 6 years ago
- Sample code for ldsc analyses in UKBB☆28Updated last year
- Benchmarking gene and variant prioritization algorithms for GWAS data☆15Updated 4 years ago
- Fine-mapping method only using summary statistics☆15Updated 8 years ago
- ☆16Updated last year
- Manhattan++☆24Updated 7 months ago
- Scripts used for generating Neale Lab UKB results☆18Updated last year
- Create LocusZoom-style plots in R.☆20Updated last year
- Code supporting analyses in paper on fine-mapping AD loci☆15Updated 3 years ago
- Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).☆13Updated last year
- Colocalisation pipeline for Open Targets Genetics☆16Updated 2 years ago
- ☆32Updated last year
- Post variant-calling QC pipeline for orienting cohort data with a reference file. Additional steps for merging and phasing with a referen…☆10Updated 5 years ago
- MultiSKAT is an R-package focused at rare-variant analysis of continuous multiple phenotype data. This project contains the R-codes/funct…☆11Updated 5 years ago
- Heritability, genetic correlation and functional enrichment estimation for case-control studies☆17Updated 9 months ago
- Stratified squared trans-ethnic genetic correlation☆12Updated 2 years ago
- R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping…☆11Updated 7 months ago
- Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.☆17Updated 2 years ago
- ☆18Updated 6 years ago
- haploR: utilities for mining Haploreg and other similar web-based tools☆9Updated 5 months ago
- Genetic correlation calculation pipeline via summary statistics for PheWeb☆13Updated 5 years ago
- Here we develop the software for the method LDpredfunct described in https://www.biorxiv.org/content/early/2018/07/24/375337☆17Updated 2 weeks ago
- R package to perform Bayesian Genome-Wide Association Studies☆38Updated 11 months ago
- Tissue of ACTion scores for Investigating Complex trait-Associated Loci☆12Updated 3 years ago
- Software to perform multi-ancestry SNP fine-mapping on molecular data☆14Updated this week
- GENI plots to visualise results from genome-wide association studies☆20Updated 2 months ago
- Code for creating cell-type-specific regulatory element annotation files☆18Updated 3 months ago