Alternatives and similar repositories for UKBB_ldsc_r2

Users that are interested in UKBB_ldsc_r2 are comparing it to the libraries listed below

• oliviasabik / RACER
  An R package for generating comparative regional association plots
  ☆18Updated 9 months ago
• RajLabMSSM / ggLocusZoom
  Create LocusZoom-style plots in R.
  ☆22Updated 2 years ago
• KeinanLab / xwas-3.0
  A Toolset for Chromosome X-Wide Association Studies
  ☆12Updated 7 years ago
• ilarsf / gwasTools
  Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)
  ☆32Updated 3 months ago
• FINNGEN / saige-pipelines
  ☆16Updated 2 years ago
• MCorentin / vargen
  VarGen is an R package designed to get a list of variants related to a disease. It just need an OMIM morbid ID as input and optionally a…
  ☆17Updated last year
• slowkow / proxysnps
  Get SNP proxies from the 1000 Genomes Project.
  ☆30Updated 6 years ago
• LaurenceHowe / SiblingGWAS
  Scripts for running a sibling GWAS
  ☆16Updated 3 years ago
• SFUStatgen / LDheatmap
  ☆17Updated 2 years ago
• andrewparkermorgan / argyle
  An R package for import, QC and analysis of Illumina Infinium genotyping arrays
  ☆34Updated 7 years ago
• kjgleason / Primo
  Primo
  ☆16Updated 4 years ago
• lindgrengroup / fatdistnGWAS
  Code and data related to the meta-analysis of fat distribution in UK Biobank and GIANT
  ☆20Updated 6 years ago
• mcveanlab / TreeWAS
  ☆16Updated 7 years ago
• boxiangliu / locuscompare
  LocusCompare is an interactive visualization tool for comparing two genetic association datasets.
  ☆21Updated 2 years ago
• hanchenphd / GMMAT
  Generalized linear Mixed Model Association Tests
  ☆44Updated last year
• sritchie73 / liftOverPlink
  A wrapper for liftOver for converting plink genotype data between different genome reference builds
  ☆51Updated 6 years ago
• kauralasoo / wiggleplotr
  A small R package to make sequencing read coverage plots in R.
  ☆39Updated 3 years ago
• Ripkelab / ricopili
  Main ricopili repo for public releases
  ☆49Updated 5 months ago
• Genentech / midasHLA
  R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping…
  ☆13Updated last year
• n-mounier / bGWAS
  R package to perform Bayesian Genome-Wide Association Studies
  ☆40Updated last year
• immunogenomics / IMPACT
  Code for creating cell-type-specific regulatory element annotation files
  ☆18Updated last year
• tobyjohnson / gtx
  Genetics ToolboX R package
  ☆32Updated 5 years ago
• RebeccaFine / benchmarker
  Benchmarking gene and variant prioritization algorithms for GWAS data
  ☆15Updated 5 years ago
• DudbridgeLab / avengeme
  Statistical properties of polygenic risk scores
  ☆19Updated 5 years ago
• RajLabMSSM / echolocatoR
  Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.
  ☆40Updated 2 years ago
• bvoightlab / ColocQuiaL
  Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.
  ☆20Updated last month
• andreyshabalin / ramwas
  RaMWAS: Fast Methylome-Wide Association Study Pipeline for Enrichment Platforms
  ☆10Updated 3 years ago
• andywdahl / rgwas
  Learn and validate subtypes from multiple traits
  ☆20Updated 4 years ago
• Yves-CHEN / DENTIST
  DENTIST (Detecting Errors iN analyses of summary staTISTics) is a QC tool for summary-data-based analyses.
  ☆26Updated last year
• oncogenetics / LocusExplorer
  An interactive graphical illustration of genetic associations and their biological context
  ☆17Updated last year