Alternatives and similar repositories for gassocplot2

Users that are interested in gassocplot2 are comparing it to the libraries listed below

• jrs95 / geni.plots
  GENI plots to visualise results from genome-wide association studies
  ☆30Updated 11 months ago
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆54Updated 3 months ago
• RHReynolds / LDSCforRyten
  S-LDSC scripts for use on MR server.
  ☆10Updated 3 years ago
• clagiamba / moloc
  ☆36Updated 4 years ago
• jrs95 / gassocplot
  Regional association plots
  ☆26Updated last year
• anastasia-lucas / hudson
  An R package for creating mirrored Manhattan plots
  ☆18Updated 2 years ago
• StatFunGen / pecotmr
  Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
  ☆28Updated 2 weeks ago
• RajLabMSSM / catalogueR
  Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).
  ☆14Updated 2 years ago
• cnfoley / mrclust
  R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.
  ☆17Updated 3 years ago
• xtonyjiang / GNOVA
  A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.
  ☆30Updated last year
• variani / finemapr
  Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
  ☆33Updated 3 months ago
• RajLabMSSM / echolocatoR
  Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.
  ☆40Updated 2 years ago
• segrelabgenomics / QTLEnrich
  Assessing enrichment of complex disease or trait associations among QTLs
  ☆15Updated 5 years ago
• huwenboshi / hess
  Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
  ☆41Updated 7 years ago
• MRC-Epid / pGWAS_discovery
  Code repository for Pietzner M, Wheeler E, et al. 2021 "Mapping the proteo-genomic convergence of human diseases"
  ☆25Updated 4 years ago
• bogdanlab / RHOGE
  Estimate genetic correlation using predicted expression
  ☆22Updated 7 years ago
• daiqile96 / OTTERS
  A powerful TWAS framework leveraging summary-level reference data
  ☆31Updated 5 months ago
• ckhunsr1 / PUMICE
  PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics
  ☆12Updated last year
• opain / Calculating-FUSION-TWAS-weights-pipeline
  This is a pipeline for calculating weights for TWAS
  ☆32Updated 3 years ago
• dingruofan / xQTLbiolinks
  xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs
  ☆37Updated 7 months ago
• hakyimlab / summary-gwas-imputation
  harmonization, liftover, and imputation of summary statistics from GWAS
  ☆33Updated 5 years ago
• mglev1n / locusplotr
  Create Regional Association Plots
  ☆12Updated last week
• cuelee / pleio
  ☆19Updated last month
• adriaan-vd-graaf / mrlink2
  MR-link-2: pleiotropy robust cis MR
  ☆20Updated last month
• kjgleason / Primo
  Primo
  ☆16Updated 4 years ago
• wuyangf7 / OPERA
  This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…
  ☆36Updated 11 months ago
• Jeremy37 / AD_finemap
  Code supporting analyses in paper on fine-mapping AD loci
  ☆16Updated 4 years ago
• tobyjohnson / gtx
  Genetics ToolboX R package
  ☆32Updated 5 years ago
• hailianghuang / FM-summary
  Fine-mapping method only using summary statistics
  ☆20Updated 9 years ago
• RayDebashree / PLACO
  A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics
  ☆34Updated 2 months ago