Scripts for processing single liver cells RNA-Seq 10X Genomics Data
☆26Oct 17, 2018Updated 7 years ago
Alternatives and similar repositories for singleLiverCells
Users that are interested in singleLiverCells are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R Data: Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations☆31May 12, 2020Updated 5 years ago
- Code for "Single cell transcriptomes from human kidneys reveal the cellular identity of renal tumours"☆27Jun 5, 2018Updated 7 years ago
- Event page: https://www.csc.fi/web/training/-/single-cell-rnaseq-r-2018☆13Sep 24, 2018Updated 7 years ago
- Scripts used for the Differential NicheNet analyses in the Liver Atlas paper Guilliams et al., Cell 2022☆10Jan 12, 2022Updated 4 years ago
- This is the official repository for the Human Cell Atlas Heart project.☆32Jul 28, 2020Updated 5 years ago
- represent each cell in UMAP plots as a pie chart☆16Sep 27, 2021Updated 4 years ago
- R code for metaanalysis of single cell liver data☆12Feb 1, 2021Updated 5 years ago
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11May 25, 2023Updated 2 years ago
- ☆16Jul 9, 2024Updated last year
- RNA-seq workflow: differential transcript usage☆23Aug 20, 2023Updated 2 years ago
- Batch effects and the effective design of single-cell gene expression studies☆105Jul 23, 2019Updated 6 years ago
- Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…☆25Jun 21, 2022Updated 3 years ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆28May 15, 2024Updated last year
- ☆12Oct 31, 2020Updated 5 years ago
- Cell type purification by single-cell transcriptome-trained sorting☆14Jul 8, 2019Updated 6 years ago
- Tutorials and code for ISMB 2019 short course on Recent Advances in Statistical Methods and Computational Algorithms for Single-Cell Omic…☆41Jul 21, 2019Updated 6 years ago
- Find circRNAs in RNA-seq data.☆15Jul 5, 2016Updated 9 years ago
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆22Nov 10, 2021Updated 4 years ago
- pipelines to process scRNA-seq data☆12Jan 11, 2021Updated 5 years ago
- 10x snRNA-seq study on 5 postmortem human brain regions across the reward circuitry: NAc, AMY, sACC, DLPFC, and HPC☆25Jul 15, 2022Updated 3 years ago
- Tools and methods for analysis of single cell assay data in R☆261Oct 17, 2025Updated 5 months ago
- ☆12May 4, 2022Updated 3 years ago
- Single RNA-seq data analysis with R (Finland, May, 2019)☆230Aug 1, 2022Updated 3 years ago
- Code for the paper on the ICR immune signatures and prognostic significance pan-cancer (TCGA)☆10Jul 22, 2020Updated 5 years ago
- ☆17Dec 18, 2023Updated 2 years ago
- ☆14Apr 20, 2023Updated 2 years ago
- ☆14Mar 11, 2022Updated 4 years ago
- Code repository for the snRNA-seq cross-tissue atlas project☆21Feb 22, 2022Updated 4 years ago
- Explore and share your scRNAseq clustering results☆50Sep 6, 2023Updated 2 years ago
- Bioinformatics Pipeline☆12Oct 7, 2022Updated 3 years ago
- Brendan's skeleton scRNAseq workflow using scran, Seurat, and scClustViz☆11Apr 22, 2020Updated 5 years ago
- Dimensionality reduction for single cell RNA-seq data☆36Feb 9, 2020Updated 6 years ago
- The following repository contains code for all scRNAseq analysis and visualization performed in the paper: Single cell resolution analysi…☆17Oct 22, 2021Updated 4 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Jan 25, 2022Updated 4 years ago
- DEPRECATED Tools for manipulating cell expression format (CEF) files☆12Oct 10, 2017Updated 8 years ago
- SimRA (Simulation based on Random-graphs Algorithms) is a framework for simulating generic and complex evolutionary scenarios of multiple…☆13Nov 28, 2022Updated 3 years ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆97Jul 31, 2019Updated 6 years ago
- Integrative pipeline for profiling DNA copy number and inferring tumor phylogeny☆20Jan 15, 2020Updated 6 years ago
- Single cell RNA-seq analysis bundle☆37Sep 13, 2019Updated 6 years ago