Alternatives and similar repositories for singleLiverCells

Users that are interested in singleLiverCells are comparing it to the libraries listed below

• jdekanter / CHETAH
  scRNA-seq cell type identification
  ☆44Updated 6 years ago
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆75Updated 5 years ago
• single-cell-genetics / cellSNP
  Pileup biallelic SNPs from single-cell and bulk RNA-seq data
  ☆83Updated 3 years ago
• tgen / banovichlab
  Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).
  ☆48Updated last year
• Neurosurgery-Brain-Tumor-Center-DiazLab / CONICS
  CONICS: COpy-Number analysis In single-Cell RNA-Sequencing
  ☆76Updated 2 years ago
• GIS-SP-Group / RCA
  R package for robust clustering of single cell RNA sequencing data
  ☆39Updated 2 years ago
• cssmillie / ulcerative_colitis
  ☆64Updated 5 years ago
• MarioniLab / EmbryoTimecourse2018
  Data and analysis scripts for our Embryo Timecourse paper.
  ☆68Updated 6 years ago
• MarioniLab / DropletUtils
  Clone of the Bioconductor repository for the DropletUtils package.
  ☆64Updated 5 months ago
• elimereu / matchSCore2
  ☆56Updated 5 years ago
• bvieth / scRNA-seq-pipelines
  Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"
  ☆55Updated 4 years ago
• sridnona / cb_sniffer
  mutation(barcode) caller for 10x single cell data
  ☆44Updated 5 years ago
• ggjlab / scMCA
  Mouse cell atlas
  ☆61Updated 5 years ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆61Updated 3 years ago
• JunyueC / sci-RNA-seq3_pipeline
  Processing pipeline scripts for sci-RNA-seq3 (bash, R, python)
  ☆45Updated 4 years ago
• cozygene / bisque
  An R toolkit for estimation of cell composition from bulk expression data
  ☆81Updated 7 months ago
• Japrin / sscClust
  simpler single cell RNAseq data clustering
  ☆43Updated 11 months ago
• foreverdream2 / dysfunction_interaction_test
  ☆30Updated 7 years ago
• dgrun / StemID
  Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data.
  ☆43Updated 8 years ago
• jon-xu / scSplit
  Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…
  ☆41Updated 3 years ago
• Michorlab / tnbc_scrnaseq
  ☆42Updated 7 years ago
• statgen / popscle
  A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…
  ☆58Updated 4 years ago
• arc85 / celltalker
  Inference of cell-cell communication from single-cell RNAseq data
  ☆49Updated 9 months ago
• haniffalab / scRNA-seq_analysis
  Single cell RNA-seq analysis bundle
  ☆37Updated 6 years ago
• caleblareau / gchromVAR
  Cell type specific enrichments using finemapped variants and quantitative epigenetic data
  ☆47Updated 2 years ago
• NBISweden / single-cell_sib_scilifelab
  SIB/Scilifelab autumn school in single cell omics 2019.
  ☆22Updated 6 years ago
• prabhakarlab / RCAv2
  R package for robust clustering of single cell RNA sequencing data
  ☆36Updated last year
• McGranahanLab / TcellExTRECT
  ☆48Updated last year
• shenorrLabTRDF / bseqsc
  Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline
  ☆46Updated 2 years ago
• faryabib / too-many-cells
  Cluster single cells and analyze cell clade relationships with colorful visualizations.
  ☆46Updated 4 years ago