BaderLab / singleLiverCellsLinks
Scripts for processing single liver cells RNA-Seq 10X Genomics Data
☆26Updated 7 years ago
Alternatives and similar repositories for singleLiverCells
Users that are interested in singleLiverCells are comparing it to the libraries listed below
Sorting:
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆75Updated 2 years ago
- scRNA-seq cell type identification☆43Updated 6 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- R package for robust clustering of single cell RNA sequencing data☆39Updated 2 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- ☆55Updated 5 years ago
- ☆63Updated 5 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 6 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 5 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 5 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆63Updated 4 months ago
- scWGCNA☆61Updated 3 years ago
- ☆34Updated 6 years ago
- ☆48Updated last year
- ☆30Updated 7 years ago
- Mouse cell atlas☆61Updated 5 years ago
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data.☆43Updated 8 years ago
- ☆34Updated 6 years ago
- simpler single cell RNAseq data clustering☆42Updated 10 months ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆86Updated last month
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆46Updated 9 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆47Updated last year
- R Data: Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations☆30Updated 5 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- Processing pipeline scripts for sci-RNA-seq3 (bash, R, python)☆45Updated 4 years ago
- R package for robust clustering of single cell RNA sequencing data☆36Updated last year