theislab / trVAE

Related projects ⓘ

Alternatives and complementary repositories for trVAE

• calico / scnym
  Semi-supervised adversarial neural networks for classification of single cell transcriptomics data
  ☆73Updated 11 months ago
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆48Updated 2 years ago
• openproblems-bio / neurips2021-notebooks
  ☆28Updated 2 years ago
• romain-lopez / scVI-reproducibility
  Reproducing the experiments of the paper "Deep generative modeling for single-cell transcriptomics"
  ☆56Updated 5 years ago
• klarman-cell-observatory / scPhere
  ☆97Updated last year
• txWang / BERMUDA
  BERMUDA (Batch Effect ReMoval Using Deep Autoencoders) is a novel transfer-learning-based method for batch correction in scRNA-seq data.
  ☆27Updated 4 years ago
• willtownes / nsf-paper
  Nonnegative spatial factorization for multivariate count data
  ☆57Updated last year
• thomasmaxwellnorman / Perturbseq_GI
  Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"
  ☆49Updated 4 years ago
• kimmo1019 / scDEC
  Simultaneous deep generative modeling and clustering of single cell genomic data
  ☆29Updated 2 years ago
• AltschulerWu-Lab / scScope
  ☆48Updated 5 years ago
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆65Updated last year
• theislab / ncem
  Learning cell communication from spatial graphs of cells
  ☆102Updated 10 months ago
• KrishnaswamyLab / MELD
  Quantifying experimental perturbations at single cell resolution
  ☆105Updated last month
• zcang / SpaOTsc
  ☆44Updated last year
• PayamDiba / SERGIO
  A simulator for single-cell expression data guided by gene regulatory networks
  ☆55Updated 6 months ago
• Teichlab / MultiMAP
  MultiMAP for integration of single cell multi-omics
  ☆53Updated last year
• YosefLab / SymSim
  ☆24Updated last month
• livnatje / DIALOGUE
  DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…
  ☆105Updated 9 months ago
• scvae / scvae
  Deep learning for single-cell transcript counts
  ☆81Updated 4 years ago
• eugenelin1 / DRA
  ☆16Updated 4 years ago
• KrishnaswamyLab / AAnet
  Archetypal Analysis network (AAnet)
  ☆31Updated 3 weeks ago
• scverse / scvi-tools-skeleton
  Template repository for creating novel models with scvi-tools
  ☆19Updated last year
• eleozzr / desc
  Deep Embedding for Single-cell Clustering
  ☆87Updated 7 months ago
• xiaoyeye / GCNG
  using graph convolutional neural network and spaital transcriptomics data to infer cell-cell interactions
  ☆55Updated 3 years ago
• imsb-uke / scGAN
  Realistic in silico generation and augmentation of single cell RNA-seq data using Generative Adversarial Neural Networks
  ☆77Updated 5 months ago
• nitzanlab / biolord
  ☆67Updated 3 months ago
• aertslab / arboreto
  A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.
  ☆53Updated 7 months ago
• cantinilab / OT-scOmics
  This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…
  ☆37Updated last year
• davidbuterez / CellVGAE
  An unsupervised scRNA-seq analysis workflow with graph attention networks
  ☆24Updated last year
• calico / scmmd
  Maximum mean discrepancy comparisons for single cell profiling experiments
  ☆15Updated 2 years ago