Conditional out-of-distribution prediction
☆63Aug 2, 2024Updated last year
Alternatives and similar repositories for trVAE
Users that are interested in trVAE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆23Jan 6, 2026Updated 5 months ago
- Single cell perturbation prediction☆350Dec 5, 2024Updated last year
- Reference mapping for single-cell genomics☆405Mar 21, 2026Updated 2 months ago
- ☆98Aug 12, 2024Updated last year
- ☆34Oct 4, 2020Updated 5 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆15Jul 8, 2022Updated 3 years ago
- Models and datasets for perturbational single-cell omics☆178Aug 19, 2022Updated 3 years ago
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆146Aug 14, 2024Updated last year
- epigenome analysis to rank transcription factors☆15Dec 19, 2019Updated 6 years ago
- This code contains the neural network implementation from the nature communication manuscript NCOMMS-16-25447A.☆33Feb 8, 2018Updated 8 years ago
- Single-cell perturbation analysis☆327Updated this week
- CellDrift: temporal perturbation effects for single cell data☆13Dec 3, 2022Updated 3 years ago
- Realistic in silico generation and augmentation of single cell RNA-seq data using Generative Adversarial Neural Networks☆88May 27, 2024Updated 2 years ago
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆37Jul 29, 2025Updated 10 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- CellRank: dynamics from multi-view single-cell data☆454Updated this week
- Spatial reconstruction of dissociated single-cell data☆20Jan 12, 2024Updated 2 years ago
- Deep probabilistic analysis of single-cell and spatial omics data☆1,638Updated this week
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆177Feb 25, 2025Updated last year
- ☆40Feb 24, 2026Updated 3 months ago
- data and model repository for single-cell data☆136Dec 21, 2023Updated 2 years ago
- Differential expression analysis for single-cell RNA-seq data.☆206Oct 21, 2025Updated 7 months ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆97Jul 31, 2019Updated 6 years ago
- Deep count autoencoder for denoising scRNA-seq data☆273Mar 21, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A Bayesian model for compositional single-cell data analysis☆198Jan 13, 2026Updated 5 months ago
- A library for the deconvolution of bulk cell samples using single-cell RNA expression data.☆23Nov 3, 2021Updated 4 years ago
- muon is a multimodal omics Python framework☆269May 8, 2026Updated last month
- RNA velocity estimation in Python☆176Oct 7, 2025Updated 8 months ago
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell lev…☆185Sep 7, 2023Updated 2 years ago
- ☆67May 17, 2026Updated 3 weeks ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆41Jun 18, 2023Updated 2 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Sep 24, 2018Updated 7 years ago
- A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing☆34Nov 4, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- RNA Velocity generalized through dynamical modeling☆504Feb 25, 2026Updated 3 months ago
- SCelVis - web-based visualization of single-cell data. Demo☆22Mar 20, 2024Updated 2 years ago
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆368Feb 1, 2025Updated last year
- CAGE-sequencing analysis pipeline with trimming, alignment and counting of CAGE tags.☆11Updated this week
- RNA velocity validation☆22Mar 16, 2022Updated 4 years ago
- Toolset for training quantitative sequence to function models.☆23Mar 15, 2024Updated 2 years ago
- ☆62Apr 5, 2024Updated 2 years ago