Alternatives and similar repositories for trVAE

Users that are interested in trVAE are comparing it to the libraries listed below

• calico / scnym
  Semi-supervised adversarial neural networks for classification of single cell transcriptomics data
  ☆75Updated 8 months ago
• klarman-cell-observatory / scPhere
  ☆101Updated 2 years ago
• KrishnaswamyLab / MELD
  Quantifying experimental perturbations at single cell resolution
  ☆109Updated 11 months ago
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆69Updated 2 years ago
• zcang / SpaOTsc
  ☆45Updated last month
• romain-lopez / scVI-reproducibility
  Reproducing the experiments of the paper "Deep generative modeling for single-cell transcriptomics"
  ☆57Updated 6 years ago
• KrishnaswamyLab / SAUCIE
  ☆100Updated 10 months ago
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆52Updated 3 years ago
• wukevin / babel
  Deep learning model for single-cell inference of multi-omic profiles from a single input modality.
  ☆43Updated 2 years ago
• AltschulerWu-Lab / scScope
  ☆48Updated 6 years ago
• willtownes / nsf-paper
  Nonnegative spatial factorization for multivariate count data
  ☆59Updated 2 years ago
• thomasmaxwellnorman / Perturbseq_GI
  Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"
  ☆58Updated 5 years ago
• scverse / scvi-tools-skeleton
  Template repository for creating novel models with scvi-tools
  ☆20Updated 2 years ago
• nitzanlab / biolord
  ☆81Updated last year
• KrishnaswamyLab / scprep
  A collection of scripts and tools for loading, processing, and handling single cell data.
  ☆74Updated last month
• xuyungang / scIGANs
  Generative adversarial networks for single-cell RNA-seq imputation
  ☆39Updated 5 years ago
• suinleelab / contrastiveVI
  ☆56Updated last year
• berenslab / umi-normalization
  Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…
  ☆40Updated 3 years ago
• xiaoyeye / CNNC
  covolutional neural network based coexpression analysis
  ☆79Updated 5 years ago
• kimmo1019 / scDEC
  Simultaneous deep generative modeling and clustering of single cell genomic data
  ☆32Updated 2 years ago
• theislab / ncem
  Learning cell communication from spatial graphs of cells
  ☆112Updated last year
• KrishnaswamyLab / AAnet
  Archetypal Analysis network (AAnet)
  ☆37Updated 6 months ago
• dylkot / scsim
  Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…
  ☆27Updated 3 years ago
• snap-stanford / mars
  Discovering novel cell types across heterogenous single-cell experiments
  ☆123Updated 2 years ago
• scvae / scvae
  Deep learning for single-cell transcript counts
  ☆89Updated 5 months ago
• xiaoyeye / GCNG
  using graph convolutional neural network and spaital transcriptomics data to infer cell-cell interactions
  ☆56Updated 4 years ago
• gifford-lab / prescient
  Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.
  ☆48Updated 7 months ago
• MarioniLab / sagenet
  Spatial reconstruction of dissociated single-cell data
  ☆19Updated last year
• lanagarmire / deepimpute
  An accurate and efficient deep learning method for single-cell RNA-seq data imputation
  ☆89Updated 3 years ago
• camlab-bioml / astir
  astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
  ☆54Updated 2 months ago