arq5x / bedtools
A powerful toolset for genome arithmetic.
☆141Updated 3 years ago
Alternatives and similar repositories for bedtools:
Users that are interested in bedtools are comparing it to the libraries listed below
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆156Updated last year
- Microassembly based somatic variant caller for NGS data☆154Updated 2 years ago
- NEAT read simulation tools☆98Updated 2 years ago
- ABRA2☆92Updated 2 years ago
- Rapid sensitive and accurate read mapping via quasi-mapping☆89Updated 4 years ago
- A tool set for short variant discovery in genetic sequence data.☆196Updated 3 years ago
- ☆78Updated 11 years ago
- ☆94Updated 2 years ago
- Documentation and description of AWS iGenomes S3 resource.☆111Updated 3 months ago
- VCF-kit: Assorted utilities for the variant call format☆128Updated last month
- Relevant papers for CNV and SV approaches☆94Updated 4 months ago
- phasing and Allele Specific Expression from RNA-seq☆112Updated 8 months ago
- De novo assembly based variant calling pipeline for Illumina short reads☆108Updated 4 years ago
- Visualization and annotation of CNVs from population-scale whole-genome sequencing data☆71Updated 7 years ago
- Bayesian genotyper for structural variants☆128Updated 4 years ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆90Updated 3 years ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆96Updated 10 months ago
- SV detection from paired end reads mapping☆117Updated 5 years ago
- VarDict☆194Updated last year
- This repository contains information about latest release from Genome in a Bottle project☆73Updated 5 years ago
- miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.☆182Updated 6 years ago
- Tool for stripping adaptors and/or merging paired reads with overlap into single reads.☆142Updated 8 years ago
- NextSeq specific bcl2fastq2 wrapper.☆53Updated 3 years ago
- An awk-like VCF parser☆56Updated last year
- The DevNet project on github stores the PacBio DevNet website.☆116Updated 6 years ago
- C++ htslib/bwa-mem/fermi interface for interrogating sequence data☆137Updated 7 months ago
- Structural variation and indel detection by local assembly☆244Updated last week
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps☆124Updated 6 years ago
- Whole Genome Simulator for Next-Generation Sequencing☆96Updated 3 months ago