arq5x / bedtoolsLinks
A powerful toolset for genome arithmetic.
☆142Updated 4 years ago
Alternatives and similar repositories for bedtools
Users that are interested in bedtools are comparing it to the libraries listed below
Sorting:
- Tool for stripping adaptors and/or merging paired reads with overlap into single reads.☆145Updated 9 years ago
- miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.☆182Updated 7 years ago
- Microassembly based somatic variant caller for NGS data☆154Updated 3 years ago
- NEAT read simulation tools☆101Updated 3 years ago
- A tool set for short variant discovery in genetic sequence data.☆203Updated 4 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆110Updated 5 years ago
- ☆96Updated 3 years ago
- ABRA2☆95Updated 3 years ago
- Bayesian genotyper for structural variants☆136Updated 4 years ago
- Visualization and annotation of CNVs from population-scale whole-genome sequencing data☆72Updated 7 years ago
- ☆82Updated 7 years ago
- This repository contains information about latest release from Genome in a Bottle project☆75Updated 6 years ago
- VarDict☆201Updated last year
- phasing and Allele Specific Expression from RNA-seq☆117Updated last year
- Tools for processing and analyzing structural variants.☆156Updated 3 years ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆165Updated 2 years ago
- Whole Genome Simulator for Next-Generation Sequencing☆102Updated this week
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆92Updated last week
- Scalable gVCF merging and joint variant calling for population sequencing projects☆174Updated last year
- samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.☆237Updated 4 years ago
- ☆91Updated 3 years ago
- Documentation and description of AWS iGenomes S3 resource.☆119Updated last year
- The DevNet project on github stores the PacBio DevNet website.☆116Updated 7 years ago
- Tools for early stage alignment file processing☆95Updated 6 years ago
- MuTect -- Accurate and sensitive cancer mutation detection☆101Updated 2 years ago
- Relevant papers for CNV and SV approaches☆94Updated last year
- Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)☆86Updated 8 years ago
- Platypus Variant Caller☆108Updated last year
- BAM Statistics, Feature Counting and Annotation☆152Updated 3 weeks ago
- SV detection from paired end reads mapping☆118Updated 6 years ago