R package for DER Finder, a method for differential expression analysis of RNA-seq data
☆22Mar 6, 2015Updated 11 years ago
Alternatives and similar repositories for derfinder
Users that are interested in derfinder are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Boiler: a software tool for highly efficient, lossy compression of RNA-seq alignments☆13Jul 14, 2016Updated 10 years ago
- Scalable RNA-seq analysis☆73Jan 12, 2021Updated 5 years ago
- Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches☆45Mar 31, 2026Updated 3 months ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11May 21, 2026Updated 2 months ago
- ChIP-seq/RNA-seq analysis software suite for gene expression heatmaps☆23Oct 12, 2017Updated 8 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- STORMSeq: Scalable Tools for Open-source Read Mapping☆19May 19, 2014Updated 12 years ago
- Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline☆27Oct 5, 2015Updated 10 years ago
- Normalization for single cell RNA-seq data☆10Aug 25, 2022Updated 3 years ago
- This is the example code repository for Learning R by Richard Cotton (O'Reilly Media)☆15Sep 16, 2013Updated 12 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Jun 4, 2024Updated 2 years ago
- Compressing next-generation sequencing data with extreme prejudice.☆83May 31, 2022Updated 4 years ago
- Rapid competitive read demulitplexer. Made with tries.☆23May 19, 2025Updated last year
- SNAPR: a bioinformatics pipeline for efficient and accurate RNA-seq alignment and analysis☆25Apr 7, 2015Updated 11 years ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆95Apr 30, 2021Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Visualize cancer genomes with FAIR single-cell RNA-seq data☆13Jan 5, 2023Updated 3 years ago
- Chromatin segmentation in R☆19Feb 4, 2018Updated 8 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆14Aug 22, 2017Updated 8 years ago
- Interactive Documents with R☆21Jul 9, 2013Updated 13 years ago
- A powerful toolset for genome arithmetic.☆143May 28, 2021Updated 5 years ago
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 10 years ago
- Code, examples, reading list for JHU Frontiers of Sequencing Data Analysis class☆24Feb 3, 2014Updated 12 years ago
- ☆18Mar 11, 2018Updated 8 years ago
- customizable robust Independent Component Analysis (ICA)☆12Sep 16, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- An R package of utilities for benchmarking and optimization☆48Aug 11, 2023Updated 2 years ago
- Shape analysis of high-throughput data☆19Feb 24, 2016Updated 10 years ago
- RNA-Seq pipeline☆36Jul 22, 2015Updated 11 years ago
- ☆17Sep 24, 2013Updated 12 years ago
- Helper functions for making brain image figures with ggplot☆23Jun 9, 2020Updated 6 years ago
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…☆29Nov 20, 2025Updated 8 months ago
- Framework for building R interfaces to shell commands☆17Oct 12, 2020Updated 5 years ago
- Analysis steps to calculate RNA Velocity in Bulk RNA-Seq samples. Step by Step Guide.☆17Jan 7, 2020Updated 6 years ago
- Talk on reproducible research at SURF: http://www.meetup.com/R-Users-Sydney/events/199742542/☆27Dec 2, 2014Updated 11 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Analysis Framework for Biological Data from High Throughput Experiments☆34Aug 24, 2016Updated 9 years ago
- Subsampling of high-throughput sequencing count data☆20May 10, 2019Updated 7 years ago
- Source code of the Bgee pipeline used to build the Bgee database☆12Updated this week
- R-Ladies Los Angeles meetup presentations☆11Oct 27, 2018Updated 7 years ago
- Fork of https://code.google.com/p/ngs-analysis☆17Sep 14, 2013Updated 12 years ago
- Extra functions to be used with the miner package☆11Jul 1, 2026Updated 3 weeks ago
- Quantitative Allele Specific Analysis of Reads. Joint genotyping & ASE inference for RNA-seq data☆29Feb 4, 2017Updated 9 years ago