Alternatives and similar repositories for derfinder:

Users that are interested in derfinder are comparing it to the libraries listed below

• pachterlab / bears_analyses
  Examples of kallisto + sleuth
  ☆11Updated 7 years ago
• seandavi / wdlRunR
  Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources
  ☆34Updated 3 years ago
• nellore / runs
  Scripts for reproducing analyses of large RNA-seq datasets
  ☆15Updated 5 years ago
• lcolladotor / derfinder
  Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches
  ☆41Updated last month
• seandavi / BiocPkgTools
  Computable build reports, package metadata, and download stats from the Bioconductor project
  ☆20Updated 2 months ago
• seandavi / Bioc2017BigDataWorkshopSession
  Tutorial for working with cloud infrastructure and AWS from R
  ☆20Updated 7 years ago
• mtmorgan / TENxGenomics
  Interface to 10x Genomics' 1.3 m single cell data set
  ☆18Updated 6 years ago
• danro9685 / SparseSignatures
  Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…
  ☆11Updated 2 months ago
• dcgerard / vicar
  Various Ideas for Confounder Adjustment in Regression
  ☆23Updated last year
• StatGenPRD / STOPGAP
  Scripts for generating integrated dataset from publically available data sources to evaluate known genetic associations evidence of varyi…
  ☆11Updated 4 years ago
• waldronlab / curatedTCGAData
  Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects
  ☆44Updated 2 months ago
• lgatto / tidies
  A Grammar of Data Manipulation for Omics Data
  ☆21Updated 4 years ago
• tmuetze / Bioconductor_RCy3_the_new_RCytoscape
  Update RCytoscape to work for Cytoscape 3.0 and higher using CyREST
  ☆17Updated 6 years ago
• drisso / archive-RUVSeq
  Archived version of RUVSeq
  ☆8Updated 7 years ago
• sarbal / EGAD
  Gene network analysis
  ☆19Updated 2 years ago
• fperraudeau / bioc2017singlecell
  Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…
  ☆11Updated 7 years ago
• waldronlab / GSEABenchmarkeR
  Reproducible GSEA Benchmarking
  ☆13Updated 2 months ago
• QTCAT / qtcat
  Quantitative Trait Cluster Association Test in R
  ☆25Updated 3 years ago
• kwanjeeraw / grinn
  a Graph database and R package for omic data integration
  ☆20Updated 8 years ago
• Bioconductor / bioc_git_transition
  This python package is for transitioning bioconductor from SVN to git
  ☆14Updated last year
• zhanxw / seqminer
  Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R
  ☆30Updated 3 months ago
• Bioconductor / BuildABiocWorkshop
  Template for building a bioconductor workshop package using github actions
  ☆19Updated 6 months ago
• timothy-barry / ondisc
  Space- and time-optimal algorithms for large single-cell expression matrices, with a focus on single-cell CRISPR screens.
  ☆11Updated 9 months ago
• HenrikBengtsson / git-bioc
  LEGACY: Git commands to keep a Git repository and Bioconductor SVN in sync
  ☆10Updated 8 years ago
• areyesq89 / SummarizedBenchmark
  SummarizedBenchmark defines a flexible framework for benchmarking computational methods in R.
  ☆15Updated 3 years ago
• malhamdoosh / EGSEA
  This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.
  ☆10Updated 11 months ago
• caleblareau / immune_cell_signature_genes
  Repository for signature genes from Immune Cell Atlas
  ☆18Updated 5 years ago
• StoreyLab / lfa
  logistic factor analysis
  ☆16Updated 10 months ago
• PeteHaitch / DelayedMatrixStats
  A port of the matrixStats API to work with DelayedMatrix objects from the DelayedArray package
  ☆15Updated last week