daler / pybedtoolsLinks
Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")
☆321Updated 4 months ago
Alternatives and similar repositories for pybedtools
Users that are interested in pybedtools are comparing it to the libraries listed below
Sorting:
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆335Updated 3 weeks ago
- tools for adding mutations to existing .bam files, used for testing mutation callers☆244Updated 8 months ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆124Updated 5 years ago
- GFF and GTF file manipulation and interconversion☆301Updated last year
- Extension for Jupyter which integrates igv.js☆154Updated 2 years ago
- This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.☆242Updated 2 years ago
- Count bases in BAM/CRAM files☆319Updated 3 years ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆320Updated last month
- cython + htslib == fast VCF and BCF processing☆405Updated 10 months ago
- ☆279Updated 5 months ago
- BEDOPS: high-performance genomic feature operations☆343Updated 2 months ago
- Performant Pythonic GenomicRanges☆477Updated 4 months ago
- C++ API & command-line toolkit for working with BAM data☆425Updated last month
- VarDict☆198Updated last year
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆194Updated last week
- parallel fastq-dump wrapper☆298Updated 2 years ago
- This Snakemake pipeline implements the GATK best-practices workflow☆254Updated 2 years ago
- Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.☆369Updated 3 weeks ago
- GFF and GVF specification documents☆214Updated last year
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆251Updated 3 weeks ago
- Customizable workflows based on snakemake and python for the analysis of NGS data☆399Updated 3 weeks ago
- Documentation for the ANNOVAR software☆242Updated last week
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆160Updated 2 years ago
- UCSC command line bioinformatic utilities☆183Updated 11 months ago
- Bayesian haplotype-based mutation calling☆313Updated 4 months ago
- A python extension for quick access to bigWig and bigBed files☆233Updated 5 months ago
- RNA-seq workflow using STAR and DESeq2☆342Updated 11 months ago
- Precision HLA typing from next-generation sequencing data☆199Updated last year
- Plot structural variant signals from many BAMs and CRAMs☆544Updated last year
- A structural variation pipeline for short-read sequencing☆189Updated this week