daler / pybedtoolsLinks
Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")
☆322Updated 5 months ago
Alternatives and similar repositories for pybedtools
Users that are interested in pybedtools are comparing it to the libraries listed below
Sorting:
- Extension for Jupyter which integrates igv.js☆154Updated 2 years ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆125Updated 5 years ago
- tools for adding mutations to existing .bam files, used for testing mutation callers☆244Updated 10 months ago
- BEDOPS: high-performance genomic feature operations☆350Updated 3 months ago
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆338Updated 2 months ago
- A python extension for quick access to bigWig and bigBed files☆233Updated 7 months ago
- Performant Pythonic GenomicRanges☆483Updated 5 months ago
- cython + htslib == fast VCF and BCF processing☆411Updated 11 months ago
- GFF and GTF file manipulation and interconversion☆305Updated last year
- This Snakemake pipeline implements the GATK best-practices workflow☆257Updated 2 years ago
- This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.☆243Updated 2 years ago
- Count bases in BAM/CRAM files☆319Updated 3 years ago
- VarDict☆198Updated last year
- parallel fastq-dump wrapper☆299Updated 2 years ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆323Updated 2 months ago
- GFF and GVF specification documents☆215Updated last year
- SUPPA: Fast quantification of splicing and differential splicing☆279Updated last year
- Plot structural variant signals from many BAMs and CRAMs☆544Updated last year
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆256Updated last month
- List of gene lists for genomic analyses.☆222Updated 3 years ago
- C++ API & command-line toolkit for working with BAM data☆428Updated 3 months ago
- A structural variation pipeline for short-read sequencing☆192Updated this week
- ☆288Updated 6 months ago
- A collection of scripts and notes related to genomics and bioinformatics☆216Updated last month
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆195Updated 3 weeks ago
- Documentation for the ANNOVAR software☆244Updated 3 weeks ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆162Updated 2 years ago
- Annotation and Ranking of Structural Variation☆263Updated last week
- annotate a VCF with other VCFs/BEDs/tabixed files☆383Updated last month
- RNA-seq workflow using STAR and DESeq2☆344Updated last year