cjlee112 / pygr
Python graph database framework for bioinformatics
☆93Updated 3 years ago
Alternatives and similar repositories for pygr:
Users that are interested in pygr are comparing it to the libraries listed below
- Workflow Description Language compiler for the DNAnexus platform☆40Updated last year
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 6 years ago
- [Historical] Reproducible Analyses for Bioinformatics☆106Updated 5 years ago
- Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24☆96Updated 6 years ago
- Benchmarking toolkit for variant calling☆47Updated 4 years ago
- Efficient handling of FASTQ files from Python☆50Updated 4 months ago
- Scripts, utilities and programs for genomic bioinformatics.☆81Updated last week
- fast, memory-efficient, pythonic (and command-line) access to fasta sequence files☆86Updated 7 years ago
- Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics. Found a bu…☆29Updated this week
- Convert genetic variants to minimal representation☆23Updated 7 years ago
- Position-wise analysis of sequencing and genomics data☆38Updated last year
- A Python library for interacting with the Galaxy API☆85Updated 2 months ago
- Quality control methods for human genomic variants.☆62Updated 2 years ago
- A novel pipeline framework to accelerate bioinformatics analysis☆29Updated last year
- Flexible genotype query among 30,000+ samples whole-genome☆96Updated 5 years ago
- a simple read-only sequence database, designed for short reads☆64Updated 11 months ago
- Practical, reusable scripts for bioinformatics☆98Updated 5 years ago
- Library for manipulating genomic variants and predicting their effects☆82Updated 6 months ago
- Platform for integrating genomic analysis with Jupyter Notebooks.☆44Updated 5 months ago
- ☆35Updated last year
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆97Updated last year
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆81Updated 3 months ago
- Toolkit to analyze genomic variation data, built on the GATK with Clojure☆66Updated 9 years ago
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- Utilities for building and managing bioconda recipes☆98Updated last week
- utilities for indexing and sequence extraction from FASTA files☆59Updated 3 years ago
- conda recipes for genomic data☆85Updated 3 years ago
- Fishers Exact Test for Python (Cython)☆64Updated 4 months ago