cjlee112 / pygr
Python graph database framework for bioinformatics
☆92Updated 2 years ago
Related projects: ⓘ
- Workflow Description Language compiler for the DNAnexus platform☆40Updated last year
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 6 years ago
- fast, memory-efficient, pythonic (and command-line) access to fasta sequence files☆86Updated 6 years ago
- [Historical] Reproducible Analyses for Bioinformatics☆106Updated 5 years ago
- Position-wise analysis of sequencing and genomics data☆36Updated last year
- Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics☆29Updated this week
- Scripts, utilities and programs for genomic bioinformatics.☆81Updated 7 months ago
- Efficient handling of FASTQ files from Python☆50Updated 2 weeks ago
- GA4GH Variation Representation Python Implementation☆50Updated this week
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆97Updated last year
- conda recipes for genomic data☆85Updated 3 years ago
- Extensible specification for representing and uniquely identifying biological sequence variation☆80Updated last week
- A Python library for interacting with the Galaxy API☆85Updated last month
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆78Updated last year
- Fast spliced aligner with low memory requirements☆41Updated 9 years ago
- Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24☆96Updated 6 years ago
- Library for manipulating genomic variants and predicting their effects☆81Updated 2 months ago
- ☆87Updated 5 years ago
- a simple read-only sequence database, designed for short reads☆62Updated 7 months ago
- ☆34Updated last year
- Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.☆38Updated 4 months ago
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- ☆61Updated 8 years ago
- High throughput, pain-free big data pipelines.☆30Updated 7 years ago
- Retrieve data in genomic intervals with a Python interface for tabix.☆83Updated 7 years ago
- NGS Language Bindings☆118Updated 9 months ago
- DNAnexus platform client libraries☆90Updated last week
- Utilities for building and managing bioconda recipes☆96Updated 3 weeks ago
- Recipes for bioinformatics analyses with scikit-bio☆39Updated 8 years ago
- Lightweight workflows in bioinformatics:☆23Updated 9 years ago