chapmanb / bcbbLinks
Incubator for useful bioinformatics code, primarily in Python and R
☆623Updated 5 months ago
Alternatives and similar repositories for bcbb
Users that are interested in bcbb are comparing it to the libraries listed below
Sorting:
- Bioinformatics code libraries and scripts☆532Updated 5 months ago
- Python for Bioinformatics☆255Updated 4 years ago
- Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis☆1,008Updated 10 months ago
- Tools to process and analyze deep sequencing data.☆723Updated last week
- Efficient pythonic random access to fasta subsequences☆475Updated last month
- bedtools - the swiss army knife for genome arithmetic☆985Updated 4 months ago
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆836Updated last month
- Java utilities for Bioinformatics☆504Updated 3 weeks ago
- python module to plot beautiful and highly customizable genome browser tracks☆826Updated last year
- ☆317Updated 5 years ago
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆425Updated 2 months ago
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆444Updated last year
- A list of useful bioinformatics resources☆606Updated 2 months ago
- Trinity RNA-Seq de novo transcriptome assembly☆862Updated 5 months ago
- A basic introduction to Biopython, intended for a classroom based workshop. Now on Codeberg.☆220Updated 5 years ago
- Graph-based alignment (Hierarchical Graph FM index)☆503Updated 8 months ago
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants☆495Updated this week
- Plot structural variant signals from many BAMs and CRAMs☆544Updated last year
- MACS -- Model-based Analysis of ChIP-Seq☆748Updated 3 months ago
- Python library to facilitate genome assembly, annotation, and comparative genomics☆835Updated 2 weeks ago
- Transcript assembly and quantification for RNA-Seq☆449Updated 3 weeks ago
- Fast genome-wide functional annotation through orthology assignment☆633Updated 3 weeks ago
- Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl☆396Updated last year
- Near-optimal RNA-Seq quantification☆693Updated 3 months ago
- Phylogenetic orthology inference for comparative genomics☆782Updated 8 months ago
- Differential analysis of RNA-Seq☆305Updated last month
- C++ API & command-line toolkit for working with BAM data☆425Updated last month
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,327Updated this week
- A curated list of nextflow based pipelines☆599Updated 3 weeks ago
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆513Updated 4 months ago