Alternatives and similar repositories for bcbb

Users that are interested in bcbb are comparing it to the libraries listed below

• bcbio / bcbio-nextgen
  Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
  ☆1,026Updated last year
• jorvis / biocode
  Bioinformatics code libraries and scripts
  ☆555Updated 6 months ago
• tiagoantao / bioinf-python
  Python for Bioinformatics
  ☆262Updated 5 years ago
• deeptools / deepTools
  Tools to process and analyze deep sequencing data.
  ☆751Updated 6 months ago
• mdshw5 / pyfaidx
  Efficient pythonic random access to fasta subsequences
  ☆482Updated 5 months ago
• lindenb / jvarkit
  Java utilities for Bioinformatics
  ☆516Updated this week
• jdidion / biotools
  A list of useful bioinformatics resources
  ☆623Updated 9 months ago
• deeptools / pyGenomeTracks
  python module to plot beautiful and highly customizable genome browser tracks
  ☆862Updated last year
• peterjc / biopython_workshop
  A basic introduction to Biopython, intended for a classroom based workshop. Now on Codeberg.
  ☆226Updated 5 years ago
• freebayes / freebayes
  Bayesian haplotype-based genetic polymorphism discovery and genotyping.
  ☆862Updated 8 months ago
• arq5x / bedtools2
  bedtools - the swiss army knife for genome arithmetic
  ☆1,021Updated 10 months ago
• Ensembl / ensembl-vep
  The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
  ☆529Updated last week
• cole-trapnell-lab / cufflinks
  ☆320Updated 5 years ago
• maxplanck-ie / snakepipes
  Customizable workflows based on snakemake and python for the analysis of NGS data
  ☆397Updated 2 weeks ago
• CGATOxford / UMI-tools
  Tools for handling Unique Molecular Identifiers in NGS data sets
  ☆535Updated 2 weeks ago
• nextflow-io / awesome-nextflow
  A curated list of nextflow based pipelines
  ☆620Updated 7 months ago
• DaehwanKimLab / hisat2
  Graph-based alignment (Hierarchical Graph FM index)
  ☆525Updated last week
• VoigtLab / dnaplotlib
  DNA plotting library for Python
  ☆301Updated last year
• trinityrnaseq / trinityrnaseq
  Trinity RNA-Seq de novo transcriptome assembly
  ☆881Updated last year
• deweylab / RSEM
  RSEM: accurate quantification of gene and isoform expression from RNA-Seq data
  ☆460Updated last year
• pysam-developers / pysam
  Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight…
  ☆877Updated last week
• daler / pybedtools
  Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")
  ☆328Updated 10 months ago
• FelixKrueger / Bismark
  A tool to map bisulfite converted sequence reads and determine cytosine methylation states
  ☆442Updated 6 months ago
• FelixKrueger / TrimGalore
  A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…
  ☆537Updated 2 weeks ago
• BioContainers / containers
  Bioinformatics containers
  ☆772Updated 3 months ago
• eggnogdb / eggnog-mapper
  Fast genome-wide functional annotation through orthology assignment
  ☆697Updated 7 months ago
• nf-core / sarek
  Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
  ☆541Updated this week
• crazyhottommy / bioinformatics-one-liners
  Bioinformatics one liners from Ming Tang
  ☆500Updated 5 years ago
• macs3-project / MACS
  MACS -- Model-based Analysis of ChIP-Seq
  ☆768Updated last week
• MultiQC / MultiQC
  Aggregate results from bioinformatics analyses across many samples into a single report.
  ☆1,417Updated 3 weeks ago