Alternatives and similar repositories for bcbb

Users that are interested in bcbb are comparing it to the libraries listed below

• deeptools / deepTools
  Tools to process and analyze deep sequencing data.
  ☆720Updated last month
• jorvis / biocode
  Bioinformatics code libraries and scripts
  ☆525Updated 3 months ago
• lindenb / jvarkit
  Java utilities for Bioinformatics
  ☆499Updated this week
• tiagoantao / bioinf-python
  Python for Bioinformatics
  ☆254Updated 4 years ago
• deweylab / RSEM
  RSEM: accurate quantification of gene and isoform expression from RNA-Seq data
  ☆442Updated last year
• MultiQC / MultiQC
  Aggregate results from bioinformatics analyses across many samples into a single report.
  ☆1,309Updated this week
• eggnogdb / eggnog-mapper
  Fast genome-wide functional annotation through orthology assignment
  ☆622Updated last year
• DerrickWood / kraken2
  The second version of the Kraken taxonomic sequence classification system
  ☆791Updated last month
• bcbio / bcbio-nextgen
  Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
  ☆1,005Updated 9 months ago
• davidemms / OrthoFinder
  Phylogenetic orthology inference for comparative genomics
  ☆771Updated 7 months ago
• FelixKrueger / Bismark
  A tool to map bisulfite converted sequence reads and determine cytosine methylation states
  ☆422Updated last month
• pachterlab / kallisto
  Near-optimal RNA-Seq quantification
  ☆686Updated last month
• mdshw5 / pyfaidx
  Efficient pythonic random access to fasta subsequences
  ☆470Updated last week
• crazyhottommy / bioinformatics-one-liners
  Bioinformatics one liners from Ming Tang
  ☆484Updated 4 years ago
• deeptools / pyGenomeTracks
  python module to plot beautiful and highly customizable genome browser tracks
  ☆811Updated 10 months ago
• macs3-project / MACS
  MACS -- Model-based Analysis of ChIP-Seq
  ☆743Updated last month
• gamcil / clinker
  Gene cluster comparison figure generator
  ☆577Updated 6 months ago
• metagenome-atlas / atlas
  ATLAS - Three commands to start analyzing your metagenome data
  ☆390Updated 3 weeks ago
• arq5x / bedtools2
  bedtools - the swiss army knife for genome arithmetic
  ☆979Updated 2 months ago
• rrwick / Unicycler
  hybrid assembly pipeline for bacterial genomes
  ☆599Updated 10 months ago
• jdidion / biotools
  A list of useful bioinformatics resources
  ☆604Updated last month
• pachterlab / sleuth
  Differential analysis of RNA-Seq
  ☆304Updated this week
• FelixKrueger / TrimGalore
  A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…
  ☆505Updated 2 months ago
• cole-trapnell-lab / cufflinks
  ☆316Updated 5 years ago
• ryanlayer / samplot
  Plot structural variant signals from many BAMs and CRAMs
  ☆543Updated 10 months ago
• dellytools / delly
  DELLY2: Structural variant discovery by integrated paired-end and split-read analysis
  ☆470Updated last month
• gpertea / stringtie
  Transcript assembly and quantification for RNA-Seq
  ☆439Updated 3 weeks ago
• tanghaibao / jcvi
  Python library to facilitate genome assembly, annotation, and comparative genomics
  ☆819Updated last week
• ISUgenomics / bioinformatics-workbook
  Bioinformatics Workbook repository
  ☆186Updated 3 weeks ago
• pezmaster31 / bamtools
  C++ API & command-line toolkit for working with BAM data
  ☆424Updated 2 weeks ago