chapmanb / bcbbLinks
Incubator for useful bioinformatics code, primarily in Python and R
☆626Updated 6 months ago
Alternatives and similar repositories for bcbb
Users that are interested in bcbb are comparing it to the libraries listed below
Sorting:
- Python for Bioinformatics☆257Updated 4 years ago
- Bioinformatics code libraries and scripts☆536Updated 2 weeks ago
- Java utilities for Bioinformatics☆505Updated last week
- Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis☆1,010Updated 11 months ago
- Tools to process and analyze deep sequencing data.☆726Updated 2 weeks ago
- A list of useful bioinformatics resources☆607Updated 3 months ago
- python module to plot beautiful and highly customizable genome browser tracks☆830Updated last year
- ☆317Updated 5 years ago
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆838Updated 2 months ago
- A basic introduction to Biopython, intended for a classroom based workshop. Now on Codeberg.☆220Updated 5 years ago
- Efficient pythonic random access to fasta subsequences☆478Updated 2 months ago
- bedtools - the swiss army knife for genome arithmetic☆988Updated 4 months ago
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants☆495Updated this week
- Graph-based alignment (Hierarchical Graph FM index)☆507Updated 8 months ago
- Python library to facilitate genome assembly, annotation, and comparative genomics☆838Updated last week
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆447Updated last year
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆427Updated 3 months ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆477Updated last week
- Haplotype VCF comparison tools☆438Updated last year
- Transcript assembly and quantification for RNA-Seq☆455Updated 2 weeks ago
- A quality control analysis tool for high throughput sequencing data☆518Updated last year
- Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations☆691Updated last week
- Plot structural variant signals from many BAMs and CRAMs☆544Updated last year
- Tools for handling Unique Molecular Identifiers in NGS data sets☆515Updated 3 weeks ago
- Near-optimal RNA-Seq quantification☆693Updated 3 months ago
- Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight…☆841Updated last month
- Fast genome-wide functional annotation through orthology assignment☆640Updated last month
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,337Updated this week
- ☆281Updated 5 months ago
- Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data☆211Updated 5 years ago