Alternatives and similar repositories for bcbb:

Users that are interested in bcbb are comparing it to the libraries listed below

• lindenb / jvarkit
  Java utilities for Bioinformatics
  ☆492Updated last week
• jorvis / biocode
  Bioinformatics code libraries and scripts
  ☆513Updated last week
• tiagoantao / bioinf-python
  Python for Bioinformatics
  ☆250Updated 4 years ago
• deeptools / deepTools
  Tools to process and analyze deep sequencing data.
  ☆697Updated this week
• FelixKrueger / Bismark
  A tool to map bisulfite converted sequence reads and determine cytosine methylation states
  ☆406Updated last month
• mdshw5 / pyfaidx
  Efficient pythonic random access to fasta subsequences
  ☆464Updated 4 months ago
• crazyhottommy / bioinformatics-one-liners
  Bioinformatics one liners from Ming Tang
  ☆462Updated 4 years ago
• deeptools / pyGenomeTracks
  python module to plot beautiful and highly customizable genome browser tracks
  ☆793Updated 7 months ago
• arq5x / bedtools2
  bedtools - the swiss army knife for genome arithmetic
  ☆958Updated last month
• peterjc / biopython_workshop
  A basic introduction to Biopython, intended for a classroom based workshop
  ☆218Updated 4 years ago
• daler / pybedtools
  Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")
  ☆312Updated last month
• DaehwanKimLab / hisat2
  Graph-based alignment (Hierarchical Graph FM index)
  ☆495Updated 3 months ago
• Ensembl / ensembl-vep
  The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
  ☆467Updated last week
• davidemms / OrthoFinder
  Phylogenetic orthology inference for comparative genomics
  ☆738Updated 3 months ago
• gamcil / clinker
  Gene cluster comparison figure generator
  ☆553Updated 2 months ago
• maxplanck-ie / snakepipes
  Customizable workflows based on snakemake and python for the analysis of NGS data
  ☆393Updated last week
• gpertea / stringtie
  Transcript assembly and quantification for RNA-Seq
  ☆412Updated this week
• eggnogdb / eggnog-mapper
  Fast genome-wide functional annotation through orthology assignment
  ☆588Updated 9 months ago
• ryanlayer / samplot
  Plot structural variant signals from many BAMs and CRAMs
  ☆538Updated 7 months ago
• dellytools / delly
  DELLY2: Structural variant discovery by integrated paired-end and split-read analysis
  ☆457Updated last month
• jdidion / biotools
  A list of useful bioinformatics resources
  ☆595Updated last year
• MultiQC / MultiQC
  Aggregate results from bioinformatics analyses across many samples into a single report.
  ☆1,267Updated last week
• pcingola / SnpEff
  ☆263Updated last week
• macs3-project / MACS
  MACS -- Model-based Analysis of ChIP-Seq
  ☆720Updated this week
• TransDecoder / TransDecoder
  TransDecoder source
  ☆285Updated 4 months ago
• cole-trapnell-lab / cufflinks
  ☆314Updated 4 years ago
• pachterlab / kallisto
  Near-optimal RNA-Seq quantification
  ☆673Updated 2 months ago
• pezmaster31 / bamtools
  C++ API & command-line toolkit for working with BAM data
  ☆423Updated 7 months ago
• dpryan79 / ChromosomeMappings
  This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.
  ☆238Updated 2 years ago
• bcbio / bcbio-nextgen
  Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
  ☆996Updated 5 months ago