arq5x / geminiLinks
a lightweight db framework for exploring genetic variation.
☆323Updated 5 years ago
Alternatives and similar repositories for gemini
Users that are interested in gemini are comparing it to the libraries listed below
Sorting:
- A tool set for short variant discovery in genetic sequence data.☆202Updated 4 years ago
- A flexible framework for rapid genome analysis and interpretation☆317Updated 3 years ago
- Official code repository for GATK versions 1.0 through 3.7 (core engine). For GATK 4 code, see the https://github.com/broadinstitute/gatk…☆295Updated 7 years ago
- Count bases in BAM/CRAM files☆319Updated 3 years ago
- miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.☆182Updated 6 years ago
- tools for adding mutations to existing .bam files, used for testing mutation callers☆246Updated last year
- web-based analysis tool for rare disease genomics☆195Updated last week
- Browser for ExAC consortium data☆106Updated 3 years ago
- HGVS variant name parsing and generation☆175Updated 2 years ago
- VarDict☆199Updated last year
- TransVar - multiway annotator for precision medicine☆126Updated 2 years ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆327Updated 5 months ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆385Updated 2 months ago
- BEDOPS: high-performance genomic feature operations☆352Updated 6 months ago
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆205Updated 4 years ago
- Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools☆158Updated 3 years ago
- MuTect -- Accurate and sensitive cancer mutation detection☆101Updated 2 years ago
- This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file…☆128Updated 5 years ago
- VarDict Java port☆135Updated last year
- ☆183Updated 2 years ago
- Precision HLA typing from next-generation sequencing data☆205Updated last year
- Microassembly based somatic variant caller for NGS data☆154Updated 3 years ago
- Documentation and description of AWS iGenomes S3 resource.☆117Updated 10 months ago
- This repository contains data indexes from NIST's Genome in a Bottle project.☆258Updated last year
- List of gene lists for genomic analyses.☆222Updated 3 years ago
- Detect and visualize target mutations by scanning FastQ files directly☆154Updated 3 years ago
- lumpy: a general probabilistic framework for structural variant discovery☆334Updated 3 years ago
- Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms☆402Updated 3 months ago
- The nimble & robust variant annotator☆185Updated last year
- A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline☆197Updated 2 years ago