arq5x / geminiLinks
a lightweight db framework for exploring genetic variation.
☆323Updated 5 years ago
Alternatives and similar repositories for gemini
Users that are interested in gemini are comparing it to the libraries listed below
Sorting:
- HGVS variant name parsing and generation☆175Updated 2 years ago
- Browser for ExAC consortium data☆106Updated 3 years ago
- A tool set for short variant discovery in genetic sequence data.☆200Updated 4 years ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆379Updated 2 weeks ago
- The nimble & robust variant annotator☆182Updated last year
- web-based analysis tool for rare disease genomics☆189Updated this week
- Count bases in BAM/CRAM files☆319Updated 3 years ago
- Official code repository for GATK versions 1.0 through 3.7 (core engine). For GATK 4 code, see the https://github.com/broadinstitute/gatk…☆294Updated 6 years ago
- VarDict Java port☆134Updated last year
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆202Updated 4 years ago
- A flexible framework for rapid genome analysis and interpretation☆317Updated 2 years ago
- BEDOPS: high-performance genomic feature operations☆344Updated 2 months ago
- Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24☆98Updated 7 years ago
- This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file…☆127Updated 5 years ago
- miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.☆183Updated 6 years ago
- Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools☆155Updated 2 years ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆320Updated last month
- tools for adding mutations to existing .bam files, used for testing mutation callers☆244Updated 9 months ago
- VarDict☆198Updated last year
- C++ Library to parse Illumina InterOp files☆78Updated last month
- TransVar - multiway annotator for precision medicine☆126Updated 2 years ago
- ☆279Updated 5 months ago
- ☆178Updated 2 years ago
- Microassembly based somatic variant caller for NGS data☆155Updated 3 years ago
- Official code repository for GATK versions 1.0 through 3.7 (full licensed package). For GATK 4 code, see the https://github.com/broadinst…☆143Updated 6 years ago
- MuTect -- Accurate and sensitive cancer mutation detection☆97Updated 2 years ago
- Detect and visualize target mutations by scanning FastQ files directly☆153Updated 3 years ago
- Workflows for germline short variant discovery with GATK4☆138Updated 4 years ago
- Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants …☆170Updated 5 years ago
- Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data☆212Updated 5 years ago