☆17Sep 24, 2013Updated 12 years ago
Alternatives and similar repositories for ratatosk
Users that are interested in ratatosk are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Genomics database manager☆25Mar 3, 2014Updated 12 years ago
- Infrastructure code to support DNA pipeline☆38May 5, 2015Updated 11 years ago
- Simple interface to BioMart (Python -> rpy2 -> R/BioConductor's biomaRt)☆16May 21, 2014Updated 12 years ago
- Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline☆27Oct 5, 2015Updated 10 years ago
- Concordance between variant callers☆17Nov 27, 2014Updated 11 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A package for simulating RNA-seq library preparation with parameter estimation☆23Mar 3, 2014Updated 12 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11May 21, 2026Updated 2 months ago
- The original version of MGA has been archived - please see https://github.com/crukci-bioinformatics/mga2 instead.☆24Apr 15, 2021Updated 5 years ago
- Snakemake library for bioinformatics programs, with a focus on next-generation sequencing☆22Feb 4, 2016Updated 10 years ago
- A genomics pipeline build on top of the GATK Queue framework. Main repository: https://github.com/NationalGenomicsInfrastructure/piper (m…☆21Sep 6, 2016Updated 9 years ago
- ☆43Apr 20, 2016Updated 10 years ago
- Analysis Framework for Biological Data from High Throughput Experiments☆34Aug 24, 2016Updated 9 years ago
- A small library for ranges/intervals, for use with genomic data.☆17Nov 27, 2012Updated 13 years ago
- IPython Integration into Galaxy☆31Jan 22, 2019Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A python script used to annotate genomic intervals.☆18May 29, 2020Updated 6 years ago
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Mar 3, 2017Updated 9 years ago
- python access to UCSC genomes database☆138Aug 27, 2020Updated 5 years ago
- variant discovery and annotation using GATK and Ensembl☆17Jun 27, 2013Updated 13 years ago
- Shape analysis of high-throughput data☆19Feb 24, 2016Updated 10 years ago
- A scala based DSL and framework for writing and executing bioinformatics pipelines as Directed Acyclic GRaphs☆70May 27, 2022Updated 4 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆26Dec 11, 2017Updated 8 years ago
- A simple and performant API for working with many genomic file formats in a consistent fashion☆16Mar 23, 2018Updated 8 years ago
- vcf file manipulation☆22Jul 9, 2015Updated 11 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50May 8, 2026Updated 3 months ago
- TheSparkBox is an all-in-one Spark deployment that you can use to fire up a local cluster.☆12Jun 26, 2018Updated 8 years ago
- ☆12Feb 19, 2017Updated 9 years ago
- Haplotype-based somatic genome simulator☆10Apr 20, 2026Updated 3 months ago
- Standalone C library for assembling Illumina short reads in small regions☆72Dec 15, 2022Updated 3 years ago
- Directly create a bigwig file with signal derived from a sorted and indexed bam file.☆11Jul 7, 2017Updated 9 years ago
- PARE: a computational method to Predict Active Regulatory Elements☆11Aug 8, 2025Updated last year
- MedSavant is a search engine for genetic variants☆22Apr 21, 2016Updated 10 years ago
- Library of snakemake rules.☆13Oct 2, 2018Updated 7 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A client for the Ensembl REST API written in the Python programming language☆29May 31, 2026Updated 2 months ago
- collection of small scripts or how-tos that don't fall under a separate project☆21Oct 18, 2017Updated 8 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Oct 22, 2019Updated 6 years ago
- Provides easy read/write access to genomic tracks☆22Mar 18, 2016Updated 10 years ago
- perform genotype-phenotype-association tests on a VCF with logistic regression.☆20Dec 15, 2015Updated 10 years ago
- Seqnature: incorporate SNPs and Indels into a reference genome☆16Sep 6, 2016Updated 9 years ago
- Alignment and variant-calling pipeline for Illumina HIV sequences.☆11May 19, 2020Updated 6 years ago