chapmanb / cloudbiolinux
CloudBioLinux: configure virtual (or real) machines with tools for biological analyses
☆257Updated 9 months ago
Related projects: ⓘ
- A powerful toolset for genome arithmetic.☆139Updated 3 years ago
- miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.☆181Updated 5 years ago
- HGVS variant name parsing and generation☆171Updated last year
- a toolkit for working with Oxford nanopore data☆239Updated last year
- Official code repository for GATK versions 1.0 through 3.7 (core engine). For GATK 4 code, see the https://github.com/broadinstitute/gatk…☆295Updated 6 years ago
- Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24☆96Updated 6 years ago
- de novo sequence assembler using string graphs☆237Updated 5 years ago
- Interactive web-based genome browser.☆227Updated 5 years ago
- This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file…☆122Updated 4 years ago
- C++ API & command-line toolkit for working with BAM data☆415Updated 2 months ago
- Browser for ExAC consortium data☆106Updated 2 years ago
- A tool set for short variant discovery in genetic sequence data.☆190Updated 3 years ago
- a lightweight db framework for exploring genetic variation.☆318Updated 4 years ago
- Official code repository for GATK versions 1.0 through 3.7 (full licensed package). For GATK 4 code, see the https://github.com/broadinst…☆143Updated 6 years ago
- DNAnexus platform client libraries☆90Updated last week
- FlowCraft: a component-based pipeline composer for omics analysis using Nextflow.☆241Updated 4 years ago
- Incubator for useful bioinformatics code, primarily in Python and R☆606Updated 7 months ago
- A flexible framework for rapid genome analysis and interpretation☆312Updated last year
- python access to UCSC genomes database☆134Updated 4 years ago
- List of gene lists for genomic analyses.☆215Updated 2 years ago
- Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")☆300Updated 2 months ago
- PAired-eND Assembler for DNA sequences☆129Updated 3 years ago
- Biopieces is a bioinformatic framework of tools easily used and easily created.☆140Updated 6 years ago
- lumpy: a general probabilistic framework for structural variant discovery☆309Updated 2 years ago
- The Genome Modeling System installer☆78Updated 9 years ago
- ☆119Updated this week
- Detect and visualize target mutations by scanning FastQ files directly☆149Updated 2 years ago
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆97Updated last year
- Platypus Variant Caller☆105Updated 2 months ago
- Rapid Mapping-based Isoform Quantification from RNA-Seq Reads☆124Updated 2 years ago