CloudBioLinux: configure virtual (or real) machines with tools for biological analyses
☆257Dec 19, 2023Updated 2 years ago
Alternatives and similar repositories for cloudbiolinux
Users that are interested in cloudbiolinux are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Incubator for useful bioinformatics code, primarily in Python and R☆646Feb 5, 2025Updated last year
- Run bcbio-nextgen genomic sequencing analyses using isolated containers and virtual machines☆68Jun 3, 2020Updated 6 years ago
- conda recipes for genomic data☆84Jul 31, 2021Updated 5 years ago
- Homebrew repository for CloudBioLinux: incubator for formulas to end up in homebrew-science☆19Oct 17, 2016Updated 10 years ago
- Toolkit to analyze genomic variation data, built on the GATK with Clojure☆66Nov 2, 2015Updated 11 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis☆1,031Aug 24, 2024Updated 2 years ago
- a lightweight db framework for exploring genetic variation.☆327Apr 28, 2020Updated 6 years ago
- Genetic changes we can believe in: a web based tool for variant visualization and analysis☆18Apr 17, 2013Updated 13 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Oct 2, 2026Updated last month
- Trigger the Google Genomics Pipeline API with CWL☆11Feb 7, 2017Updated 9 years ago
- ☆17Sep 24, 2013Updated 13 years ago
- A 3'-end adapter contaminant trimmer☆98Jan 23, 2018Updated 8 years ago
- Tools for bam file processing☆56Apr 20, 2015Updated 11 years ago
- pipeline for the analysis of small RNA data☆14Jun 24, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- R package for bcbio RNA-seq analysis.☆64Sep 9, 2024Updated 2 years ago
- Abbreviate strings to short, unique identifiers☆24May 10, 2022Updated 4 years ago
- Subset of the kent source libraries (perhaps out of date) that are easily built and installed on OSX and Linux. These libraries provide u…☆13Oct 30, 2012Updated 14 years ago
- Provides access to complex Bioinformatics software (even BioLinux!) in just one command.☆75Jun 28, 2017Updated 9 years ago
- Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline☆26Oct 5, 2015Updated 11 years ago
- Genomics database manager☆25Mar 3, 2014Updated 12 years ago
- Breakpointer is a fast algorithm to locate breakpoints of structural variants from single-end reads produced by next-generation sequencin…☆10May 2, 2014Updated 12 years ago
- The Refinery Platform is a data management, analysis and visualization system for bioinformatics and computational biology applications. …☆106Jan 11, 2023Updated 3 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆26Dec 11, 2017Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A genotype query interface.☆136Mar 29, 2021Updated 5 years ago
- A genomics pipeline build on top of the GATK Queue framework. Main repository: https://github.com/NationalGenomicsInfrastructure/piper (m…☆21Sep 6, 2016Updated 10 years ago
- The gkno launcher for executing tools or pipelines☆31Jan 17, 2017Updated 9 years ago
- Stupid Simple Structural Variant View☆26Nov 21, 2016Updated 9 years ago
- [Historical] Reproducible Analyses for Bioinformatics☆107Mar 11, 2019Updated 7 years ago
- Extends the scons build tool for reproducible workflows in bioinformatics.☆16Apr 16, 2026Updated 6 months ago
- Snakemake library for bioinformatics programs, with a focus on next-generation sequencing☆22Feb 4, 2016Updated 10 years ago
- a wee tool for random access into BGZF files.☆86May 10, 2018Updated 8 years ago
- Isaac Genome Alignment Software☆36Apr 7, 2015Updated 11 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- de novo sequence assembler using string graphs☆244Aug 8, 2019Updated 7 years ago
- The 3rd incarnation of the Wise package for sequence analysis☆23Jun 19, 2014Updated 12 years ago
- ☆43Apr 20, 2016Updated 10 years ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆404Jun 16, 2026Updated 4 months ago
- miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.☆181Nov 26, 2018Updated 7 years ago
- Build components for CloudMan, Galaxy on the Cloud, or Galaxy Server☆20Jun 27, 2017Updated 9 years ago
- Request for comments on interchangeable bioinformatics containers☆39Jun 18, 2019Updated 7 years ago