CloudBioLinux: configure virtual (or real) machines with tools for biological analyses
☆257Dec 19, 2023Updated 2 years ago
Alternatives and similar repositories for cloudbiolinux
Users that are interested in cloudbiolinux are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Incubator for useful bioinformatics code, primarily in Python and R☆644Feb 5, 2025Updated last year
- Run bcbio-nextgen genomic sequencing analyses using isolated containers and virtual machines☆68Jun 3, 2020Updated 6 years ago
- conda recipes for genomic data☆84Jul 31, 2021Updated 4 years ago
- Toolkit to analyze genomic variation data, built on the GATK with Clojure☆66Nov 2, 2015Updated 10 years ago
- Homebrew repository for CloudBioLinux: incubator for formulas to end up in homebrew-science☆19Oct 17, 2016Updated 9 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- a lightweight db framework for exploring genetic variation.☆329Apr 28, 2020Updated 6 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50May 8, 2026Updated 2 months ago
- Tools for bam file processing☆56Apr 20, 2015Updated 11 years ago
- Trigger the Google Genomics Pipeline API with CWL☆11Feb 7, 2017Updated 9 years ago
- Genetic changes we can believe in: a web based tool for variant visualization and analysis☆18Apr 17, 2013Updated 13 years ago
- Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline☆27Oct 5, 2015Updated 10 years ago
- A 3'-end adapter contaminant trimmer☆98Jan 23, 2018Updated 8 years ago
- ☆17Sep 24, 2013Updated 12 years ago
- A genomics pipeline build on top of the GATK Queue framework. Main repository: https://github.com/NationalGenomicsInfrastructure/piper (m…☆21Sep 6, 2016Updated 9 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- R package for bcbio RNA-seq analysis.☆64Sep 9, 2024Updated last year
- Provides access to complex Bioinformatics software (even BioLinux!) in just one command.☆75Jun 28, 2017Updated 9 years ago
- Genomics database manager☆25Mar 3, 2014Updated 12 years ago
- Stupid Simple Structural Variant View☆25Nov 21, 2016Updated 9 years ago
- The gkno launcher for executing tools or pipelines☆31Jan 17, 2017Updated 9 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆26Dec 11, 2017Updated 8 years ago
- Extends the scons build tool for reproducible workflows in bioinformatics.☆16Apr 16, 2026Updated 3 months ago
- Isaac Genome Alignment Software☆36Apr 7, 2015Updated 11 years ago
- Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis☆1,030Aug 24, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- The 3rd incarnation of the Wise package for sequence analysis☆23Jun 19, 2014Updated 12 years ago
- de novo sequence assembler using string graphs☆244Aug 8, 2019Updated 6 years ago
- ☆43Apr 20, 2016Updated 10 years ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆406Jun 16, 2026Updated last month
- Models and APIs for Genomic data. RETIRED 2018-01-24☆220Oct 28, 2022Updated 3 years ago
- Build components for CloudMan, Galaxy on the Cloud, or Galaxy Server☆20Jun 27, 2017Updated 9 years ago
- Tools for bioinformatics moved to http://git.genenetwork.org/pjotrp/bioinformatics☆264Apr 12, 2022Updated 4 years ago
- ☆25May 21, 2021Updated 5 years ago
- Request for comments on interchangeable bioinformatics containers☆39Jun 18, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Tools for next-generation sequencing analysis☆89Jun 25, 2019Updated 7 years ago
- pipeline for the analysis of small RNA data☆14Jun 24, 2019Updated 7 years ago
- create a gemini-compatible database from a VCF☆55Jan 5, 2021Updated 5 years ago
- variant discovery and annotation using GATK and Ensembl☆17Jun 27, 2013Updated 13 years ago
- Curated collection of open-source bioinformatics tools☆27Feb 5, 2019Updated 7 years ago
- Analysis Framework for Biological Data from High Throughput Experiments☆34Aug 24, 2016Updated 9 years ago
- perform genotype-phenotype-association tests on a VCF with logistic regression.☆20Dec 15, 2015Updated 10 years ago