Basic operations on the space of numerical functions defined on the genome using lazy evaluators for flexibility and efficiency
☆154May 31, 2026Updated 2 months ago
Alternatives and similar repositories for WiggleTools
Users that are interested in WiggleTools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A C library for handling bigWig files☆83Jan 17, 2025Updated last year
- A tool for bigWig files.☆118May 23, 2018Updated 8 years ago
- ☆16Jan 2, 2024Updated 2 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆44Jul 6, 2021Updated 5 years ago
- 1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates☆94Jan 28, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Mar 3, 2017Updated 9 years ago
- Genome Annotation for the Masses☆36Jul 9, 2017Updated 9 years ago
- Rapid Mapping-based Isoform Quantification from RNA-Seq Reads☆127Jun 9, 2022Updated 4 years ago
- Stupid Simple Structural Variant View☆25Nov 21, 2016Updated 9 years ago
- Quick mining and visualization of NGS data by integrating genomic databases☆273May 5, 2023Updated 3 years ago
- python wrapper to dpryan79's bigwig library using cffi☆19May 13, 2016Updated 10 years ago
- A Swiss army knife for genome projects☆15Aug 13, 2013Updated 12 years ago
- Flexible genotype query among 30,000+ samples whole-genome☆95Sep 4, 2019Updated 6 years ago
- Tools for bam file processing☆56Apr 20, 2015Updated 11 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆74Dec 4, 2024Updated last year
- BigWig and BAM utilities☆103Mar 26, 2024Updated 2 years ago
- python module to plot beautiful and highly customizable genome browser tracks☆894Jul 10, 2024Updated 2 years ago
- IDR☆179Sep 18, 2018Updated 7 years ago
- Tools to process and analyze deep sequencing data.☆762Updated this week
- python access to UCSC genomes database☆138Aug 27, 2020Updated 5 years ago
- A powerful toolset for genome arithmetic.☆143May 28, 2021Updated 5 years ago
- Scalable RNA-seq analysis☆73Jan 12, 2021Updated 5 years ago
- Genomic plot in trellis layout☆43Jan 30, 2026Updated 6 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Collection of R functions used in the Hochwagen Lab☆12Aug 4, 2025Updated last year
- Fast alignment and preprocessing of chromatin profiles☆226Mar 20, 2026Updated 4 months ago
- Directly create a bigwig file with signal derived from a sorted and indexed bam file.☆11Jul 7, 2017Updated 9 years ago
- Rapid sensitive and accurate read mapping via quasi-mapping☆90Jun 5, 2020Updated 6 years ago
- Fast fusion detection using kallisto☆80Jun 11, 2025Updated last year
- Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline☆27Oct 5, 2015Updated 10 years ago
- Interval data structure☆234Mar 18, 2026Updated 4 months ago
- FermiKit small variant calls for public SGDP samples☆17Sep 22, 2016Updated 9 years ago
- ChIP-seq analysis notes from Ming Tang☆852Aug 5, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- fast webservices based query tool for large sets of genomic features☆26May 10, 2025Updated last year
- A server for maintaining high-throughput sequencing QC data☆13Aug 5, 2025Updated last year
- HMMRATAC peak caller for ATAC-seq data☆100Nov 12, 2024Updated last year
- MUltiScale enrIchment Calling for ChIP-Seq Datasets☆23Mar 14, 2019Updated 7 years ago
- UCSC Genome Browser source. "beta" is released version / "master" is testing.☆275Updated this week
- Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps☆123Nov 8, 2018Updated 7 years ago
- conda recipes for genomic data☆84Jul 31, 2021Updated 5 years ago