Ensembl / WiggleToolsLinks
Basic operations on the space of numerical functions defined on the genome using lazy evaluators for flexibility and efficiency
☆151Updated 10 months ago
Alternatives and similar repositories for WiggleTools
Users that are interested in WiggleTools are comparing it to the libraries listed below
Sorting:
- HMMRATAC peak caller for ATAC-seq data☆99Updated 10 months ago
- A tool for bigWig files.☆119Updated 7 years ago
- Publication quality NGS track plotting☆114Updated 3 years ago
- TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files☆132Updated last year
- WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery☆107Updated 4 years ago
- An R package for inferring the subclonal architecture of tumors☆122Updated last year
- A toolset for profiling alternative splicing events in RNA-Seq data.☆82Updated 7 months ago
- Command-line tool for the visualization of splicing events across multiple samples☆130Updated last year
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- Intervene: a tool for intersection and visualization of multiple genomic region and gene sets☆143Updated last year
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆93Updated 8 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆117Updated 7 months ago
- A (mostly) universal methylation extractor for BS-seq experiments.☆172Updated last year
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆60Updated 5 years ago
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆131Updated last year
- This is the Gviz development repository. Gviz plots data and annotation information along genomic coordinates.☆87Updated 7 months ago
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆110Updated 5 years ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆71Updated 8 months ago
- BISulfite-seq CUI Toolkit☆66Updated 8 months ago
- Transcript quantification import for modular pipelines☆140Updated 3 weeks ago
- Relevant papers for CNV and SV approaches☆94Updated 10 months ago
- A factor analysis package☆101Updated 13 years ago
- Check strandedness of RNA-Seq fastq files☆125Updated 3 years ago
- phasing and Allele Specific Expression from RNA-seq☆116Updated last year
- Generate IGV style locus tracks from bigWig files in R☆168Updated 10 months ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆111Updated 4 years ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆112Updated 2 years ago
- A pipeline and a framework for NGS analysis (RNA-seq and scRNA-seq)☆54Updated 2 months ago
- ☆88Updated 2 months ago