Ensembl / WiggleTools
Basic operations on the space of numerical functions defined on the genome using lazy evaluators for flexibility and efficiency
☆142Updated 10 months ago
Related projects: ⓘ
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 6 years ago
- A tool for bigWig files.☆116Updated 6 years ago
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆89Updated 7 years ago
- ASCAT R package☆162Updated last month
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆101Updated 4 years ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆137Updated last year
- Quality of RNA-Seq Toolset☆52Updated 5 years ago
- HMMRATAC peak caller for ATAC-seq data☆98Updated 2 years ago
- ☆115Updated last year
- TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files☆124Updated 2 months ago
- nucleosome calling using ATAC-seq☆105Updated 3 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆77Updated 2 months ago
- Publication quality NGS track plotting☆103Updated 2 years ago
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆158Updated last month
- A (mostly) universal methylation extractor for BS-seq experiments.☆160Updated 2 months ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆68Updated 3 years ago
- phasing and Allele Specific Expression from RNA-seq☆107Updated 2 months ago
- WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery☆102Updated 3 years ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆99Updated last year
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆93Updated 3 years ago
- Generate IGV style locus tracks from bigWig files in R☆130Updated 5 months ago
- Microassembly based somatic variant caller for NGS data☆153Updated 2 years ago
- An R package for inferring the subclonal architecture of tumors☆115Updated 11 months ago
- Allele-specific alignment sorting☆52Updated last year
- A toolkit for QC and visualization of ATAC-seq results.☆64Updated last year
- Analysis of Chromosome Conformation Capture data (Hi-C)☆86Updated 2 months ago
- Genomic Interactive Visualization Engine☆143Updated last year
- ☆80Updated this week
- GATK RNA-Seq Variant Calling in Nextflow☆131Updated last year
- Detecting sites of genomic enrichment☆185Updated last year