Basic operations on the space of numerical functions defined on the genome using lazy evaluators for flexibility and efficiency
☆154May 31, 2026Updated last month
Alternatives and similar repositories for WiggleTools
Users that are interested in WiggleTools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool for bigWig files.☆118May 23, 2018Updated 8 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Jul 6, 2021Updated 4 years ago
- Collection of R functions used in the Hochwagen Lab☆12Aug 4, 2025Updated 10 months ago
- A C library for handling bigWig files☆82Jan 17, 2025Updated last year
- Quick mining and visualization of NGS data by integrating genomic databases☆273May 5, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- EpiGenome Gateway - WashU EpiGenome Browser☆21Oct 11, 2021Updated 4 years ago
- Scalable RNA-seq analysis☆73Jan 12, 2021Updated 5 years ago
- Genomic plot in trellis layout☆43Jan 30, 2026Updated 5 months ago
- Tools for analyzing 10X Genomics data☆42Feb 6, 2019Updated 7 years ago
- python module to plot beautiful and highly customizable genome browser tracks☆889Jul 10, 2024Updated last year
- GENome Organisation Visual Analytics☆91Feb 3, 2026Updated 4 months ago
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆74Dec 4, 2024Updated last year
- ☆16Jan 2, 2024Updated 2 years ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆488Apr 10, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- BigWig and BAM utilities☆103Mar 26, 2024Updated 2 years ago
- Boiler: a software tool for highly efficient, lossy compression of RNA-seq alignments☆13Jul 14, 2016Updated 9 years ago
- Tools to process and analyze deep sequencing data.☆762Jun 24, 2026Updated last week
- A framework to score and analyze variant effects genome-wide using ChromBPNet models☆20Mar 2, 2026Updated 3 months ago
- Genetics training camp☆21Sep 8, 2020Updated 5 years ago
- Versatile FASTA/FASTQ demultiplexer.☆33Jun 10, 2026Updated 3 weeks ago
- IDR☆178Sep 18, 2018Updated 7 years ago
- A collection of tools for Hi-C data analysis☆647Updated this week
- A server for maintaining high-throughput sequencing QC data☆13Aug 5, 2025Updated 10 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Fast alignment and preprocessing of chromatin profiles☆223Mar 20, 2026Updated 3 months ago
- A toolkit for working with ATAC-seq data.☆24Jan 22, 2026Updated 5 months ago
- ☆33Jul 11, 2018Updated 7 years ago
- bedtools - the swiss army knife for genome arithmetic☆1,040Jun 10, 2026Updated 3 weeks ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆249Jun 9, 2026Updated 3 weeks ago
- ChIP-seq analysis notes from Ming Tang☆849Aug 5, 2024Updated last year
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆25Aug 17, 2016Updated 9 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆62Jul 20, 2020Updated 5 years ago
- Documentation for NCBI BLAST AMI☆11Feb 28, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆25May 21, 2021Updated 5 years ago
- An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)☆16Jul 3, 2012Updated 13 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Apr 19, 2018Updated 8 years ago
- BEDOPS: high-performance genomic feature operations☆371Apr 29, 2025Updated last year
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Jul 19, 2022Updated 3 years ago
- make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.☆200Jan 30, 2026Updated 5 months ago
- Compare assembly graph file formats☆16Jul 23, 2015Updated 10 years ago