Basic operations on the space of numerical functions defined on the genome using lazy evaluators for flexibility and efficiency
☆154Nov 6, 2024Updated last year
Alternatives and similar repositories for WiggleTools
Users that are interested in WiggleTools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool for bigWig files.☆118May 23, 2018Updated 7 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Jul 6, 2021Updated 4 years ago
- Collection of R functions used in the Hochwagen Lab☆12Aug 4, 2025Updated 8 months ago
- A C library for handling bigWig files☆81Jan 17, 2025Updated last year
- Quick mining and visualization of NGS data by integrating genomic databases☆270May 5, 2023Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- EpiGenome Gateway - WashU EpiGenome Browser☆21Oct 11, 2021Updated 4 years ago
- Scalable RNA-seq analysis☆73Jan 12, 2021Updated 5 years ago
- Genomic plot in trellis layout☆43Jan 30, 2026Updated 2 months ago
- Tools for analyzing 10X Genomics data☆42Feb 6, 2019Updated 7 years ago
- python module to plot beautiful and highly customizable genome browser tracks☆870Jul 10, 2024Updated last year
- GENome Organisation Visual Analytics☆86Feb 3, 2026Updated 2 months ago
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆73Dec 4, 2024Updated last year
- ☆16Jan 2, 2024Updated 2 years ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆468Mar 15, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- BigWig and BAM utilities☆103Mar 26, 2024Updated 2 years ago
- Boiler: a software tool for highly efficient, lossy compression of RNA-seq alignments☆13Jul 14, 2016Updated 9 years ago
- A framework to score and analyze variant effects genome-wide using ChromBPNet models☆16Mar 2, 2026Updated last month
- Genetics training camp☆21Sep 8, 2020Updated 5 years ago
- IDR☆175Sep 18, 2018Updated 7 years ago
- Versatile FASTA/FASTQ demultiplexer.☆33May 29, 2024Updated last year
- A collection of tools for Hi-C data analysis☆634Mar 22, 2026Updated 2 weeks ago
- A server for maintaining high-throughput sequencing QC data☆13Aug 5, 2025Updated 8 months ago
- Fast alignment and preprocessing of chromatin profiles☆217Mar 20, 2026Updated 3 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- bedtools - the swiss army knife for genome arithmetic☆1,027Mar 11, 2025Updated last year
- A toolkit for working with ATAC-seq data.☆24Jan 22, 2026Updated 2 months ago
- ☆33Jul 11, 2018Updated 7 years ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆242Mar 23, 2026Updated 2 weeks ago
- ChIP-seq analysis notes from Ming Tang☆846Aug 5, 2024Updated last year
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Aug 17, 2016Updated 9 years ago
- Tools to process and analyze deep sequencing data.☆753Jul 23, 2025Updated 8 months ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆62Jul 20, 2020Updated 5 years ago
- Documentation for NCBI BLAST AMI☆11Feb 28, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆25May 21, 2021Updated 4 years ago
- An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)☆16Jul 3, 2012Updated 13 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Apr 19, 2018Updated 7 years ago
- BEDOPS: high-performance genomic feature operations☆365Apr 29, 2025Updated 11 months ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Jul 19, 2022Updated 3 years ago
- make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.☆200Jan 30, 2026Updated 2 months ago
- Compare assembly graph file formats☆16Jul 23, 2015Updated 10 years ago