Analysis of immune repertoire sequencing results
☆146Oct 6, 2026Updated this week
Alternatives and similar repositories for vdjtools
Users that are interested in vdjtools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.☆404Updated this week
- 🛜 A lightweight immune repertoire browser☆28Dec 10, 2019Updated 6 years ago
- Git-based antigen specificity database storage & management.☆157Updated this week
- An UMI-tagged sequencing swiss-knife. Built for amplicon sequencing of immune repertoires, ctDNA and rare mutations, single-cell sequenci…☆43Sep 24, 2026Updated 2 weeks ago
- TCR and BCR assembly from RNA-seq data☆364Sep 25, 2026Updated 2 weeks ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- High-throughput mapping and domain partitioning of antigen receptor sequences☆56Sep 30, 2026Updated last week
- 🧬 immunarch [R package] – Multi-Modal Immune Repertoire Analytics for Immunotherapy and Vaccine Design☆341Aug 18, 2026Updated last month
- [DEPRECATED, see https://immunarch.com/] tcR: an R package for immune receptor repertoire advanced data analysis.☆40Jun 8, 2020Updated 6 years ago
- Absolve antibody variable domain sequence analysis☆18Sep 13, 2018Updated 8 years ago
- TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data☆136Nov 28, 2023Updated 2 years ago
- Summary statistics for repertoires☆17Feb 1, 2023Updated 3 years ago
- Matching T-cell receptor repertoires to a database of antigen specificities☆39Aug 18, 2026Updated last month
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆97Dec 4, 2020Updated 5 years ago
- Software for Ontogenic aNalysis of Antibody Repertoires☆19Jun 30, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Rep-Seq data analysis tutorial☆12Dec 6, 2017Updated 8 years ago
- IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:☆54Jan 7, 2026Updated 9 months ago
- Software and test files for Recon: Reconstruction of Estimated Communities from Observed Numbers☆14Dec 16, 2025Updated 9 months ago
- Quantifiable predictive features define epitope-specific T cell receptor repertoires☆13Dec 8, 2022Updated 3 years ago
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆45Sep 8, 2026Updated last month
- B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction☆65Updated this week
- An interactive browser for the VDJdb database☆16Oct 2, 2026Updated last week
- flexible CDR based distance metrics☆75Dec 16, 2025Updated 9 months ago
- ☆32Dec 17, 2019Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…☆14Nov 12, 2019Updated 6 years ago
- Code and data used in The Great Repertoire Project☆30Jun 14, 2021Updated 5 years ago
- Decombinator: fast, error-correcting analysis of TCR repertoires☆28May 18, 2026Updated 4 months ago
- ☆11Oct 25, 2022Updated 3 years ago
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆123Sep 16, 2025Updated last year
- A scanpy extension to analyse single-cell TCR and BCR data.☆266Updated this week
- 📝 [Paper/Tutorial] T-cell repertoire annotation and motif discovery☆14Sep 15, 2025Updated last year
- This script use to analyze the immune repertoire sequenced by high throughtput sequencing☆28Dec 16, 2021Updated 4 years ago
- Instructions and analysis scripts for single cell Higher Order Testing (scHOT)☆10Oct 7, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆60Apr 16, 2019Updated 7 years ago
- A toolkit for single-cell immune profiling☆376Sep 25, 2026Updated 2 weeks ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆20Jul 6, 2026Updated 3 months ago
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆150Sep 9, 2020Updated 6 years ago
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆29Jul 1, 2020Updated 6 years ago
- Immunoglobulin and T-Cell receptor rearrangement software☆52Jan 9, 2026Updated 9 months ago
- Source code for ScanGEO Shiny App☆15Apr 18, 2022Updated 4 years ago