CGGOxford / OpossumLinks
Opossum is a tool to pre-process RNA-seq reads prior to variant calling.
☆28Updated 7 years ago
Alternatives and similar repositories for Opossum
Users that are interested in Opossum are comparing it to the libraries listed below
Sorting:
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 3 years ago
- ☆36Updated 6 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Updated 2 years ago
- An R package for predicting HR deficiency from mutation contexts☆29Updated 7 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- DriverPower☆26Updated 8 months ago
- DNA copy number detection from off-target sequence data☆32Updated 7 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆36Updated 3 years ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 6 years ago
- Generic human DNA variant annotation pipeline☆58Updated last year
- ☆33Updated 3 years ago
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 3 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- ☆21Updated last week
- Multi-sample somatic variant caller☆52Updated 3 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- Python program designed to reconstruct immunoglobulin gene rearrangements and oncogenic translocations from WGS, WES and capture NGS in l…☆20Updated 2 years ago
- Fast fusion detection using kallisto☆79Updated 3 months ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 5 months ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- Flexible Bayesian inference of mutational signatures☆36Updated 2 years ago
- A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.☆41Updated 3 weeks ago
- Cloud-based single-cell copy-number variation analysis tool☆51Updated 2 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 7 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 3 years ago
- Irons out wrinkles in noisy coverage data using robust PCA☆15Updated 4 months ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago