CGGOxford / OpossumView external linksLinks
Opossum is a tool to pre-process RNA-seq reads prior to variant calling.
☆28Jul 7, 2018Updated 7 years ago
Alternatives and similar repositories for Opossum
Users that are interested in Opossum are comparing it to the libraries listed below
Sorting:
- ☆22Feb 5, 2025Updated last year
- Structural Variation breakpoint discovery via adaptive learning☆16Jul 6, 2023Updated 2 years ago
- A mosaic detecting software based on phasing and random forest☆70Dec 8, 2025Updated 2 months ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Mar 5, 2019Updated 6 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Aug 24, 2022Updated 3 years ago
- Search for activating regulatory variants in the tumor genome☆14Apr 11, 2025Updated 10 months ago
- ☆36Jul 28, 2019Updated 6 years ago
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Aug 19, 2020Updated 5 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆54Jun 5, 2017Updated 8 years ago
- visualization tools for exon/junction coverage☆11Dec 30, 2019Updated 6 years ago
- Approach to identify simple and complex structural genomic rearrangements using a randomized approach☆21Nov 14, 2018Updated 7 years ago
- Single sample network reconstruction in R☆24Apr 6, 2020Updated 5 years ago
- Mutational signature analysis for low statistics SNV data☆64Aug 7, 2024Updated last year
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆25Oct 4, 2024Updated last year
- Differential Mutation Analysis☆11May 24, 2020Updated 5 years ago
- R package for CRAG☆12Feb 17, 2025Updated 11 months ago
- Optimizing Cancer Mutation Signatures Jointly with Sampling Likelihood☆10Aug 22, 2022Updated 3 years ago
- Pipeline for generating RNAseq-based cancer patient reports☆11Feb 4, 2026Updated last week
- Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing using unmatched normal sample(s) for log ra…☆12Sep 15, 2023Updated 2 years ago
- Pan gGnome Viewer☆10Jul 10, 2025Updated 7 months ago
- Boiler: a software tool for highly efficient, lossy compression of RNA-seq alignments☆13Jul 14, 2016Updated 9 years ago
- highly-efficient & lightweight mutation signature matrix aggregation☆19Jan 12, 2022Updated 4 years ago
- Python OncoPrint library based on Matplotlib☆25Sep 23, 2025Updated 4 months ago
- Platypus Variant Caller☆108Jun 27, 2024Updated last year
- Hemang Parikh☆11Jan 12, 2016Updated 10 years ago
- Multivariate adaptive shrinkage methods used for analysis GTEx data in Urbut et al (2017).☆12Sep 25, 2017Updated 8 years ago
- ☆11May 26, 2023Updated 2 years ago
- iLASH - IBD Estimation Using Locality Sensitive Hashing☆17Nov 6, 2025Updated 3 months ago
- A python package for learning mutational signatures and their multidimensional genomic properties☆15Sep 1, 2020Updated 5 years ago
- A novel management, annotation, and machine learning framework for analyzing cancer mutations☆31Jul 4, 2024Updated last year
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆56Updated this week
- Classifying tumor types based on Whole Genome Sequencing (WGS) data☆49Nov 20, 2023Updated 2 years ago
- ☆76Jun 4, 2021Updated 4 years ago
- The original version of MGA has been archived - please see https://github.com/crukci-bioinformatics/mga2 instead.☆25Apr 15, 2021Updated 4 years ago
- Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.☆11Feb 25, 2021Updated 4 years ago
- Predict cell cycle phase in a continuum from single-cell RNA-seq data☆12Nov 14, 2020Updated 5 years ago
- UVC, a very accurate small-variant caller (https://doi.org/10.1093/bib/bbab458)☆14May 18, 2025Updated 8 months ago
- materials and website for the 2016 kallisto sleuth workshop☆11Nov 7, 2016Updated 9 years ago
- ☆11Jun 23, 2017Updated 8 years ago