Alternatives and similar repositories for eMAGMA-tutorial:

Users that are interested in eMAGMA-tutorial are comparing it to the libraries listed below

• atgu / ukbb_pan_ancestry
  Analyses conducting GWAS across the UKBB diverse superpopulations
  ☆48Updated 5 months ago
• variani / finemapr
  Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
  ☆30Updated last year
• astheeggeggs / PHESANT
  PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank
  ☆18Updated 2 years ago
• mikegloudemans / gwas-download
  Easily download publicly available GWAS summary statistics.
  ☆75Updated last year
• boxiangliu / locuscomparer
  LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.
  ☆111Updated 2 years ago
• pjgreer / ukb-rap-tools
  Scripts and workflows for use analyzing UK Biobank data from the DNANexus Research Analysis Platform
  ☆52Updated last year
• gusevlab / fusion_twas
  methods for functional summary-based imputation
  ☆79Updated 2 years ago
• brielin / Popcorn
  Software for estimating correlation of trait effect sizes across populations
  ☆43Updated 2 years ago
• getian107 / PRScsx
  Cross-population polygenic prediction
  ☆78Updated 3 months ago
• opentargets / genetics-sumstat-harmoniser
  Harmonise GWAS summary statistics against a reference VCF
  ☆41Updated 3 years ago
• Annefeng / PBK-QC-pipeline
  Partners Biobank genomics data QC
  ☆25Updated 4 years ago
• leelabsg / SKAT
  Sequence kernel association test (SKAT)
  ☆45Updated 2 weeks ago
• RitchieLab / eQTpLot
  Visualization of Colocalization Between eQTL and GWAS Data
  ☆79Updated 2 years ago
• clagiamba / moloc
  ☆34Updated 4 years ago
• eQTL-Catalogue / eQTL-Catalogue-resources
  ☆46Updated 4 months ago
• MRCIEU / gwasvcf
  Reading, querying and writing GWAS summary data in VCF format
  ☆77Updated 10 months ago
• saigegit / SAIGE
  Development for SAIGE and SAIGE-GENE(+)
  ☆70Updated this week
• cnfoley / hyprcoloc
  R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data
  ☆47Updated 4 years ago
• totajuliusd / topr
  topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…
  ☆57Updated 4 months ago
• FinucaneLab / pops
  ☆73Updated 2 years ago
• gamazonlab / MR-JTI
  ☆55Updated last month
• huwenboshi / hess
  Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
  ☆42Updated 6 years ago
• meyer-lab-cshl / plinkQC
  R package for quality control of plink genetic datasets
  ☆58Updated last month
• hakyimlab / summary-gwas-imputation
  harmonization, liftover, and imputation of summary statistics from GWAS
  ☆31Updated 4 years ago
• omerwe / polyfun
  PolyFun (POLYgenic FUNctionally-informed fine-mapping)
  ☆102Updated 2 months ago
• gkichaev / PAINTOR_V3.0
  Fast, integrative fine mapping with functional data
  ☆57Updated 5 years ago
• Kyoko-wtnb / FUMA-webapp
  Source code of FUMA GWAS web application
  ☆57Updated last year
• cumc / xqtl-protocol
  Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium
  ☆43Updated this week
• zhenin / HDL
  High-definition likelihood inference of genetic correlations (HDL)
  ☆102Updated 3 weeks ago
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆44Updated last year