eskederks / eMAGMA-tutorialLinks
A step by step guide on how to use eMAGMA, an approach to conducting eQTL informed gene-based tests.
☆70Updated 4 years ago
Alternatives and similar repositories for eMAGMA-tutorial
Users that are interested in eMAGMA-tutorial are comparing it to the libraries listed below
Sorting:
- Scripts and workflows for use analyzing UK Biobank data from the DNANexus Research Analysis Platform☆69Updated 3 months ago
- Partners Biobank genomics data QC☆30Updated 5 years ago
- corrplot of LDSC genetic correlation results☆55Updated 3 years ago
- Cross-population polygenic prediction☆89Updated 9 months ago
- Analyses conducting GWAS across the UKBB diverse superpopulations☆53Updated 4 months ago
- Meta-analysis of genomewide association scans☆60Updated last year
- PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank☆19Updated 3 years ago
- High-definition likelihood inference of genetic correlations (HDL)☆122Updated 2 months ago
- methods for functional summary-based imputation☆88Updated 3 years ago
- Visualization of Colocalization Between eQTL and GWAS Data☆85Updated 3 years ago
- Repo for the R package coloc☆174Updated last month
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆33Updated 3 months ago
- LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.☆115Updated 2 years ago
- Software for estimating correlation of trait effect sizes across populations☆49Updated 3 months ago
- PolyFun (POLYgenic FUNctionally-informed fine-mapping)☆124Updated 9 months ago
- Harmonise GWAS summary statistics against a reference VCF☆41Updated 4 years ago
- MetaXcan software and manuscript☆173Updated 2 months ago
- Easily download publicly available GWAS summary statistics.☆76Updated last year
- Rapid standardisation and quality control of GWAS or QTL summary statistics☆86Updated 3 weeks ago
- R interface to the IEU GWAS database API☆98Updated last month
- Causal Mixture Model for GWAS summary statistics☆83Updated this week
- topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…☆68Updated 11 months ago
- Source code of FUMA GWAS web application☆57Updated last year
- R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data☆55Updated 4 years ago
- Genotype-based Prediction (GenoPred)☆73Updated this week
- Performs the Mendelian Randomization Pleiotropy RESidual Sum and Outlier (MR-PRESSO) method.☆90Updated 2 years ago
- ☆36Updated 4 years ago
- ☆72Updated last week
- UTMOST (unified test for molecular signatures) is a method for cross-tissue gene expression imputation for transcriptome-wide association…☆39Updated 2 years ago
- ☆57Updated 8 months ago