Alternatives and similar repositories for ctwas

Users that are interested in ctwas are comparing it to the libraries listed below

• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆53Updated 5 months ago
• eQTL-Catalogue / eQTL-Catalogue-resources
  ☆50Updated 3 weeks ago
• xqwen / torus
  QTL Discovery using Annotations
  ☆28Updated 2 years ago
• hakyimlab / gtex-gwas-analysis
  ☆24Updated 4 years ago
• RajLabMSSM / echolocatoR
  Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.
  ☆42Updated 2 years ago
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆48Updated 2 years ago
• douglasyao / mesc
  Mediated Expression Score Regression (MESC)
  ☆26Updated last month
• andreyshabalin / MatrixEQTL
  Matrix eQTL: Ultra fast eQTL analysis via large matrix operations
  ☆87Updated 2 years ago
• thewonlab / H-MAGMA
  ☆35Updated 2 years ago
• myles-lewis / locuszoomr
  A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.
  ☆52Updated 9 months ago
• clagiamba / moloc
  ☆37Updated 4 years ago
• totajuliusd / topr
  topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…
  ☆71Updated this week
• RajLabMSSM / ggLocusZoom
  Create LocusZoom-style plots in R.
  ☆22Updated 2 years ago
• StatFunGen / xqtl-protocol
  Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium
  ☆47Updated this week
• hakyimlab / summary-gwas-imputation
  harmonization, liftover, and imputation of summary statistics from GWAS
  ☆35Updated 5 years ago
• broadinstitute / gtex-v8
  Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper
  ☆43Updated 11 months ago
• PejLab / Pantry
  Pan-transcriptomic phenotyping
  ☆19Updated last month
• xqwen / dap
  software package for integrative genetic association analysis
  ☆35Updated 2 years ago
• mancusolab / twas_sim
  Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform …
  ☆29Updated 2 years ago
• mancusolab / sushie
  Software to perform multi-ancestry SNP fine-mapping on molecular data
  ☆28Updated 4 months ago
• fauman / EGEA
  Every Gene Ever Annotated in published GWAS
  ☆50Updated 3 years ago
• MalteThodberg / awesome-multitrait-gwas
  List of software packages for multi-trait / multiple-trait / multivariate / high-dimensional GWAS
  ☆31Updated last week
• boxiangliu / locuscompare
  LocusCompare is an interactive visualization tool for comparing two genetic association datasets.
  ☆21Updated 2 years ago
• variani / finemapr
  Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
  ☆35Updated 5 months ago
• FinucaneLab / pops
  ☆87Updated 4 months ago
• single-cell-genetics / limix_qtl
  ☆20Updated 4 months ago
• gkichaev / PAINTOR_V3.0
  Fast, integrative fine mapping with functional data
  ☆61Updated 6 years ago
• brielin / Popcorn
  Software for estimating correlation of trait effect sizes across populations
  ☆50Updated 6 months ago
• jrs95 / gassocplot2
  Regional association plots
  ☆24Updated last year
• wuyangf7 / OPERA
  This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…
  ☆36Updated last year