Alternatives and similar repositories for ctwas:

Users that are interested in ctwas are comparing it to the libraries listed below

• eQTL-Catalogue / eQTL-Catalogue-resources
  ☆46Updated 4 months ago
• xqwen / torus
  QTL Discovery using Annotations
  ☆24Updated 2 years ago
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆51Updated 3 months ago
• randel / MIND
  Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution
  ☆44Updated last year
• clagiamba / moloc
  ☆34Updated 4 years ago
• MalteThodberg / awesome-multitrait-gwas
  List of software packages for multi-trait / multiple-trait / multivariate / high-dimensional GWAS
  ☆30Updated 4 months ago
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆44Updated last year
• rivas-lab / public-resources
  Repository for resources we'd like to share with the community.
  ☆24Updated 2 years ago
• douglasyao / mesc
  Mediated Expression Score Regression (MESC)
  ☆26Updated 2 years ago
• weizhou0 / qtl
  ☆25Updated last month
• single-cell-genetics / limix_qtl
  ☆20Updated 8 months ago
• myles-lewis / locuszoomr
  A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.
  ☆40Updated 2 weeks ago
• thewonlab / H-MAGMA
  ☆32Updated last year
• fauman / EGEA
  Every Gene Ever Annotated in published GWAS
  ☆47Updated 2 years ago
• leelabsg / SKAT
  Sequence kernel association test (SKAT)
  ☆45Updated last month
• anastasia-lucas / hudson
  An R package for creating mirrored Manhattan plots
  ☆18Updated 2 years ago
• brielin / Popcorn
  Software for estimating correlation of trait effect sizes across populations
  ☆44Updated 2 years ago
• totajuliusd / topr
  topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…
  ☆57Updated 5 months ago
• FinucaneLab / pops
  ☆73Updated 2 years ago
• xqwen / dap
  software package for integrative genetic association analysis
  ☆34Updated last year
• opentargets / genetics-sumstat-harmoniser
  Harmonise GWAS summary statistics against a reference VCF
  ☆41Updated 3 years ago
• gagneurlab / OUTRIDER
  OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data
  ☆50Updated 2 weeks ago
• weizhou0 / GATE
  ☆22Updated last year
• hakyimlab / summary-gwas-imputation
  harmonization, liftover, and imputation of summary statistics from GWAS
  ☆31Updated 4 years ago
• waldronlab / HGNChelper
  Identify and correct invalid gene symbols
  ☆59Updated 4 months ago
• bhattacharya-a-bt / isotwas
  ☆21Updated 2 months ago
• atgu / ukbb_pan_ancestry
  Analyses conducting GWAS across the UKBB diverse superpopulations
  ☆50Updated 5 months ago
• powellgenomicslab / onek1k_phase1
  Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types
  ☆26Updated 3 years ago
• ajaynadig / bhr
  Suite of heritability and genetic correlation estimation tools for exome-sequencing data
  ☆33Updated 3 weeks ago