meritxellop / eGTEx_mQTLs_eQTLs_GWAS
☆17Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for eGTEx_mQTLs_eQTLs_GWAS
- Code for the meQTL analyses presented in Hawe et al. 2021 Nature Genetics☆13Updated 2 years ago
- Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data☆15Updated 6 months ago
- PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics☆12Updated last year
- Regional association plots☆25Updated 7 months ago
- Assessing enrichment of complex disease or trait associations among QTLs☆13Updated 4 years ago
- Code repository for Pietzner M, Wheeler E, et al. 2021 "Mapping the proteo-genomic convergence of human diseases"☆23Updated 3 years ago
- Descriptions/scripts for pre-process and processed data for FUMA cell specificity analyses (scRNA-seq)☆22Updated 4 years ago
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆23Updated 2 years ago
- This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…☆31Updated last month
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆42Updated last year
- Kidney Epigenome and Transcriptome-based multi-stage Prioritization☆16Updated 2 years ago
- ☆18Updated 8 months ago
- ☆33Updated 3 years ago
- codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data☆19Updated 3 years ago
- Colocalization analysis of genetic association signals☆47Updated this week
- Methods for converting eQTL summary statistics into TWAS SNP-weights☆13Updated 7 months ago
- xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs☆28Updated 3 months ago
- Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1☆17Updated 4 years ago
- Mediated Expression Score Regression (MESC)☆26Updated 2 years ago
- ☆17Updated 8 months ago
- MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…☆10Updated 2 years ago
- MA-FOCUS: Multi-Ancestry Fine-mapping Of CaUsal gene Sets☆24Updated 6 months ago
- ☆15Updated 5 months ago
- identifying disease critical cell types and programs from single cell RNAseq☆51Updated 2 years ago
- GWAS genetics Fine-mapping method☆18Updated last month
- Code supporting analyses in paper on fine-mapping AD loci☆15Updated 3 years ago
- Statistical fine-mapping pipeline in FinnGen☆26Updated last week
- Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types☆24Updated 3 years ago
- ☆21Updated 3 years ago
- An R package for performing MetaSTAAR procedure in whole-genome sequencing studies☆21Updated last week