andersen-lab / bjorn

Related projects: ⓘ

• baymlab / wastewater_analysis
  Variant abundance estimation for SARS-CoV-2 in wastewater using RNA-Seq quantification
  ☆17Updated 11 months ago
• ecbush / xenoGI
  Code for detecting genomic island insertions in clades of microbes.
  ☆19Updated last year
• peterk87 / nf-flu
  Influenza genome analysis Nextflow workflow
  ☆22Updated last month
• variant-database / vdb
  A SARS-CoV-2 Mutation Pattern Query Tool
  ☆17Updated last year
• deprekate / PHACTS
  A simple program to classify the lifestyle of phages.
  ☆16Updated last year
• adamhockenberry / bacphlip
  A python library for predicting phage lifestyle based on genome sequence
  ☆34Updated last year
• niemasd / ViralMSA
  Reference-guided multiple sequence alignment of viral genomes
  ☆58Updated last week
• chrisruis / MutTui
  MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets
  ☆25Updated 2 months ago
• simonwhelan / prequal
  PREQUAL: a pre-alignment quality filter for comparative sequence analyses
  ☆30Updated 2 years ago
• tothuhien / lsd-0.3beta
  ☆12Updated 5 years ago
• bacpop / mandrake
  Mandrake 🌿/👨‍🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding
  ☆36Updated 9 months ago
• apcamargo / prodigal-gv
  A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes
  ☆27Updated 11 months ago
• soedinglab / WIsH
  Predict prokaryotic host for phage metagenomic sequences
  ☆50Updated this week
• davidemms / SHOOT
  SHOOT.bio - the phylogenetic search engine
  ☆24Updated last year
• nextstrain / avian-flu
  Nextstrain build for avian influenza viruses
  ☆19Updated this week
• rcedgar / palmscan
  ☆25Updated last year
• metagentools / GraphBin2
  ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs
  ☆33Updated last month
• fmenardo / Treemmer
  Python tool to reduce size and redundancy of phylogenetic datasets
  ☆24Updated last year
• rcedgar / palmdb
  Database of virus RdRP barcode sequences
  ☆15Updated 2 months ago
• yosuken / MAGRE
  ☆12Updated 3 years ago
• theiagen / public_health_bacterial_genomics
  ☆26Updated last year
• bacpop / ggCaller
  Bifrost graph gene caller.
  ☆86Updated last month
• NicolaDM / MAPLE
  MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.
  ☆43Updated last month
• artic-network / primer-schemes
  Primer schemes for real-time genome epidemiology
  ☆27Updated last year
• CDCgov / aquascope
  ☆16Updated this week
• cmmr / virmap
  ☆25Updated 3 years ago
• wtmatlock / flanker
  Gene-flank analysis tool
  ☆25Updated 4 months ago
• boulund / phaster_scripts
  Small utility script to submit genomes to PHASTER for phage detection
  ☆22Updated 2 years ago
• ktmeaton / ncov-recombinant
  Reproducible workflow for SARS-CoV-2 recombinant sequence detection.
  ☆18Updated last year
• broadinstitute / StrainGE
  strain-level analysis tools
  ☆32Updated 2 weeks ago