Alternatives and similar repositories for bjorn

Users that are interested in bjorn are comparing it to the libraries listed below

• epi2me-labs / wf-artic
  ARTIC SARS-CoV-2 workflow and reporting
  ☆50Updated 9 months ago
• flu-crew / parnas
  Phylogenetic maximum representation sampling: choosing most representative strains or taxa
  ☆40Updated 4 months ago
• niemasd / ViralMSA
  Reference-guided multiple sequence alignment of viral genomes
  ☆70Updated 3 months ago
• cmmr / EsViritu
  Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data
  ☆49Updated 2 weeks ago
• nextstrain / avian-flu
  Nextstrain build for avian influenza viruses
  ☆27Updated this week
• NicolaDM / MAPLE
  MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.
  ☆57Updated 3 months ago
• vinisalazar / metaphor
  Metaphor: a general-purpose workflow for assembly and binning of metagenomes
  ☆40Updated 2 months ago
• ecbush / xenoGI
  Code for detecting genomic island insertions in clades of microbes.
  ☆19Updated 2 years ago
• PedroMTQ / mantis
  A package to annotate protein sequences
  ☆61Updated 11 months ago
• peterk87 / nf-flu
  Influenza genome analysis Nextflow workflow
  ☆31Updated 4 months ago
• INSaFLU / INSaFLU
  INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…
  ☆41Updated this week
• dhelekal / CaveDive
  ☆18Updated last year
• jonas-fuchs / varVAMP
  Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.
  ☆48Updated last week
• USDA-VS / GenoFLU
  Influenza data pipeline to automate genotyping assignment
  ☆39Updated 3 months ago
• bioforensics / pytaxonkit
  Python bindings for the TaxonKit library
  ☆43Updated last week
• quick-lab / SARS-CoV-2
  SARs-CoV-2 Primer schemes
  ☆16Updated 8 months ago
• dib-lab / genome-grist
  map Illumina metagenomes to genomes!
  ☆38Updated 2 weeks ago
• variant-database / vdb
  A SARS-CoV-2 Mutation Pattern Query Tool
  ☆17Updated 2 years ago
• maximilianh / multiSub
  Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…
  ☆36Updated 3 years ago
• bacpop / ggCaller
  Bifrost graph gene caller.
  ☆98Updated 3 weeks ago
• iqtree / piqtree
  A Python library that exposes features from IQ-TREE - efficient software for phylogenomic inference
  ☆41Updated this week
• ku-cbd / PhageBoost
  Rapid discovery of novel prophages using biological feature engineering and machine learning
  ☆36Updated last year
• chrisruis / MutTui
  MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets
  ☆33Updated last year
• insapathogenomics / ReporTree
  A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data
  ☆47Updated 3 months ago
• metagentools / GraphBin2
  ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs
  ☆37Updated 3 months ago
• virus-evolution / gofasta
  ☆37Updated 3 weeks ago
• pathoplexus / pathoplexus
  An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.
  ☆49Updated this week
• dib-lab / charcoal
  Remove contaminated contigs from genomes using k-mers and taxonomies.
  ☆59Updated 2 years ago
• telatin / gan
  📜 the Great Automatic Nomenclator — The Next Million Names for Archaea and Bacteria
  ☆41Updated 3 months ago
• jonas-fuchs / BAMdash
  create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks
  ☆57Updated last month