Alternatives and similar repositories for bjorn

Users that are interested in bjorn are comparing it to the libraries listed below

• epi2me-labs / wf-artic
  ARTIC SARS-CoV-2 workflow and reporting
  ☆50Updated 9 months ago
• flu-crew / parnas
  Phylogenetic maximum representation sampling: choosing most representative strains or taxa
  ☆40Updated 4 months ago
• niemasd / ViralMSA
  Reference-guided multiple sequence alignment of viral genomes
  ☆70Updated 3 months ago
• NicolaDM / MAPLE
  MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.
  ☆57Updated 3 months ago
• nextstrain / avian-flu
  Nextstrain build for avian influenza viruses
  ☆27Updated last week
• cmmr / EsViritu
  Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data
  ☆49Updated 2 weeks ago
• PoonLab / covizu
  Rapid analysis and visualization of coronavirus genome variation
  ☆48Updated 3 weeks ago
• USDA-VS / GenoFLU
  Influenza data pipeline to automate genotyping assignment
  ☆39Updated 3 months ago
• dib-lab / genome-grist
  map Illumina metagenomes to genomes!
  ☆38Updated 3 weeks ago
• ecbush / xenoGI
  Code for detecting genomic island insertions in clades of microbes.
  ☆19Updated 2 years ago
• steineggerlab / conterminator
  Detection of incorrectly labeled sequences across kingdoms
  ☆88Updated 3 years ago
• deprekate / PHANOTATE
  PHANOTATE: a gene caller for phages.
  ☆82Updated last year
• maximilianh / multiSub
  Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…
  ☆36Updated 3 years ago
• virus-evolution / gofasta
  ☆37Updated 3 weeks ago
• jonas-fuchs / BAMdash
  create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks
  ☆57Updated 2 months ago
• chrisruis / MutTui
  MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets
  ☆33Updated last year
• ncbi / rapt
  This RAPT repository has been retired as of December 2024. NCBI's Read assembly and Annotation Pipeline Tool (RAPT) was a pilot service.
  ☆58Updated 10 months ago
• rpetit3 / vcf-annotator
  Add biological annotations to variants in a given VCF file.
  ☆32Updated 4 years ago
• variant-database / vdb
  A SARS-CoV-2 Mutation Pattern Query Tool
  ☆17Updated 2 years ago
• iqtree / piqtree
  A Python library that exposes features from IQ-TREE - efficient software for phylogenomic inference
  ☆41Updated this week
• bacpop / ggCaller
  Bifrost graph gene caller.
  ☆98Updated 3 weeks ago
• peterk87 / nf-flu
  Influenza genome analysis Nextflow workflow
  ☆31Updated 4 months ago
• GATB / simka
  Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.
  ☆51Updated 4 years ago
• niemasd / TreeCluster
  Efficient phylogenetic clustering of viral sequences
  ☆91Updated 2 months ago
• dib-lab / charcoal
  Remove contaminated contigs from genomes using k-mers and taxonomies.
  ☆59Updated 2 years ago
• linsalrob / genbank_to
  Convert genbank files to a swath of other formats
  ☆28Updated last month
• broadinstitute / delphy
  Fast, scalable, accurate and accessible Bayesian phylogenetics
  ☆41Updated this week
• W-L / ProblematicSites_SARS-CoV2
  ☆50Updated 3 years ago
• jonas-fuchs / varVAMP
  Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.
  ☆48Updated last week
• moshi4 / MGCplotter
  Microbial Genome Circular plotting tool for comparative genomics using Circos
  ☆39Updated 3 years ago