Alternatives and similar repositories for bjorn:

Users that are interested in bjorn are comparing it to the libraries listed below

• flu-crew / parnas
  Phylogenetic maximum representation sampling: choosing most representative strains or taxa
  ☆35Updated 2 months ago
• nextstrain / avian-flu
  Nextstrain build for avian influenza viruses
  ☆23Updated this week
• tothuhien / lsd-0.3beta
  ☆12Updated 5 years ago
• variant-database / vdb
  A SARS-CoV-2 Mutation Pattern Query Tool
  ☆17Updated last year
• evolbioinfo / pastml
  Ancestral character reconstruction and visualisation for rooted phylogenetic trees
  ☆32Updated last month
• snake-flu / datafunk
  Miscellaneous data manipulation tools
  ☆9Updated last year
• jaleezyy / covid-19-signal
  Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.
  ☆31Updated last month
• peterk87 / nf-flu
  Influenza genome analysis Nextflow workflow
  ☆26Updated last month
• niemasd / ViralMSA
  Reference-guided multiple sequence alignment of viral genomes
  ☆65Updated last month
• corneliusroemer / pango_aliasor
  Utility to alias and dealias pango lineages
  ☆22Updated last year
• jts / ncov-tools
  Small collection of tools for performing quality control on coronavirus sequencing data and genomes
  ☆49Updated 9 months ago
• baymlab / wastewater_analysis
  Variant abundance estimation for SARS-CoV-2 in wastewater using RNA-Seq quantification
  ☆16Updated last year
• maximilianh / multiSub
  Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…
  ☆35Updated 2 years ago
• quick-lab / SARS-CoV-2
  SARs-CoV-2 Primer schemes
  ☆15Updated last year
• CDCgov / seqsender
  Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories
  ☆34Updated last week
• USDA-VS / GenoFLU
  Influenza data pipeline to automate genotyping assignment
  ☆25Updated 2 weeks ago
• theiagen / public_health_bacterial_genomics
  ☆27Updated last year
• virus-evolution / gofasta
  ☆35Updated last week
• artic-network / primer-schemes
  Primer schemes for real-time genome epidemiology
  ☆27Updated last year
• andersen-lab / avian-influenza
  Consensus sequences for U.S. H5N1 clade 2.3.4.4b
  ☆28Updated this week
• chrisruis / MutTui
  MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets
  ☆28Updated 7 months ago
• UPHL-BioNGS / Grandeur
  UPHL's Reference Free Pipeline
  ☆25Updated 2 weeks ago
• CFIA-NCFAD / nf-flu
  Influenza genome analysis Nextflow workflow
  ☆19Updated 3 weeks ago
• grubaughlab / DENV_pipeline
  ☆16Updated 3 weeks ago
• INSaFLU / INSaFLU
  INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…
  ☆33Updated last week
• epi2me-labs / wf-artic
  ARTIC SARS-CoV-2 workflow and reporting
  ☆50Updated 2 months ago
• NicolaDM / MAPLE
  MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.
  ☆48Updated 3 weeks ago
• pathoplexus / pathoplexus
  An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.
  ☆32Updated this week
• BDI-pathogens / phyloscanner
  Phylogenetics between and within hosts at once, all along the genome.
  ☆48Updated 4 months ago