GenSpectrum / LAPIS-SILOLinks
Sequence Indexing engine for Large Omics data
☆17Updated last week
Alternatives and similar repositories for LAPIS-SILO
Users that are interested in LAPIS-SILO are comparing it to the libraries listed below
Sorting:
- Summarise nucleotide counts at a set of positions in a BAM file to search for mixtures☆13Updated 3 years ago
- An API, a query engine, and a database schema for genomic sequences; currently with a focus on SARS-CoV-2☆27Updated this week
- k-mers and the like☆22Updated last month
- app to collapse Pango lineages for reporting☆12Updated last year
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆38Updated last month
- ☆23Updated 8 months ago
- Iterate over minimizers of a DNA sequence☆31Updated last year
- kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more☆43Updated 3 weeks ago
- Repository containing a method for automatically identifying pathogen lineages from a phylogeny.☆17Updated 2 years ago
- Manipulate and generate figures for trees in Newick format☆22Updated 3 months ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆46Updated last year
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆26Updated last year
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆40Updated 2 weeks ago
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆32Updated 2 years ago
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆29Updated last year
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆20Updated last year
- A FASTA/FASTQ format parser library☆20Updated last year
- Generate random test data for bioinformatics☆26Updated last year
- Nail is an Alignment Inference tooL☆54Updated last week
- Utility to alias and dealias pango lineages☆23Updated last year
- A quality control tool for FASTQ files written in rust☆52Updated 5 months ago
- Efficient and fast querying and parsing of GTDB's data☆29Updated 3 months ago
- A command line utilty for working with BINSEQ files☆30Updated this week
- ☆12Updated 2 years ago
- Simple-to-use interactive comparison of two bacterial genomes☆18Updated this week
- Host depletion optimised for clinical metagenomic sequencing applications☆16Updated last year
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆33Updated 2 months ago
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆39Updated last year
- Variant call verification☆16Updated 6 months ago
- Course materials for an introduction to SARS-CoV-2 sequencing data analysis☆14Updated last year