High-performance analytical database for sequence alignment data
☆19Jun 11, 2026Updated this week
Alternatives and similar repositories for LAPIS-SILO
Users that are interested in LAPIS-SILO are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An API, a query engine, and a database schema for genomic sequences; currently with a focus on SARS-CoV-2☆31Jun 3, 2026Updated last week
- An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.☆57Updated this week
- A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV…☆37Updated this week
- LLaMA2 + Rust☆14Aug 8, 2023Updated 2 years ago
- A tool for exploring large trees in the browser☆133May 7, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Summarise nucleotide counts at a set of positions in a BAM file to search for mixtures☆13Apr 5, 2022Updated 4 years ago
- Cython API for the Mutation Annotated Tree (MAT) Online Phylogenetics Toolkit☆14May 28, 2025Updated last year
- Utility to alias and dealias pango lineages☆23Dec 18, 2023Updated 2 years ago
- A web platform to detect and analyze variants of SARS-CoV-2☆61Jun 3, 2026Updated last week
- Svelte carousel image gallery component with thumbnail support 🖼, ported from react-image-gallery☆21Mar 4, 2023Updated 3 years ago
- US Health and Human Services scientific funding visualizations☆17Updated this week
- A SQL query compiler written in Rust from scratch☆21Sep 21, 2024Updated last year
- Tools for evolutionary forecasting☆14Feb 9, 2026Updated 4 months ago
- Programmatically interact with the GISAID database.☆82Aug 5, 2025Updated 10 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Estimating time trees from very large phylogenies☆28Jul 21, 2024Updated last year
- app to collapse Pango lineages for reporting☆13Dec 9, 2025Updated 6 months ago
- ☆12Feb 15, 2023Updated 3 years ago
- A Cursor type for use with rust-postgres☆15May 31, 2023Updated 3 years ago
- ngshmmalign is a profile HMM aligner for NGS reads designed particularly for small genomes (such as those of RNA viruses like HIV-1 and H…☆10May 3, 2018Updated 8 years ago
- SARS-Cov-2 Recombinant Finder for fasta sequences☆50Jun 22, 2022Updated 3 years ago
- A Nextflow pipeline for NGS variant calling on SARS-CoV-2. From FASTQ files to normalized and annotated VCF files from GATK, BCFtools, Lo…☆20Jul 11, 2024Updated last year
- Simple Manipulation Of Trees☆14Aug 16, 2025Updated 9 months ago
- Automatically compress podcasts to tiny file sizes for bandwidth constrained devices like cellular.☆10May 5, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 2 years ago
- OxidSQL (Toy) SQL Database in Rust☆82Jul 19, 2025Updated 10 months ago
- Snakemake workflow management system and CLI generation tool☆67Oct 22, 2025Updated 7 months ago
- Quality control for phylogenetic analyses☆13May 25, 2026Updated 2 weeks ago
- Ultrafast Sample Placement on Existing Trees☆140Jun 1, 2026Updated last week
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆46Updated this week
- A viewer for multiple alignment format (MAF) files in JBrowse 2☆14Jun 3, 2026Updated last week
- ☆51Mar 11, 2022Updated 4 years ago
- Minimum Information about any (X) Sequence” (MIxS) specification☆63Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files☆22Jun 3, 2026Updated last week
- Sample code for triggering Globus Flows using the Python watchdog library.☆20May 25, 2026Updated 2 weeks ago
- Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement☆259May 26, 2026Updated 2 weeks ago
- ☆30Mar 6, 2025Updated last year
- Browser-based utility for phylogenetic tree visualisation.☆40Jun 1, 2026Updated last week
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆37Updated this week
- Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)☆60Mar 23, 2023Updated 3 years ago