CDCgov / SARS-CoV-2_SequencingLinks
A collection of sequencing protocols and bioinformatic resources for SARS-CoV-2 sequencing.
☆348Updated 2 years ago
Alternatives and similar repositories for SARS-CoV-2_Sequencing
Users that are interested in SARS-CoV-2_Sequencing are comparing it to the libraries listed below
Sorting:
- ARTIC nanopore protocol for nCoV2019 novel coronavirus☆170Updated 2 years ago
- Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement☆233Updated this week
- Genome assembly evaluation tool☆440Updated 6 months ago
- 🌈 Interactive analysis of metagenomics data☆420Updated 8 months ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆510Updated last year
- NCBI Prokaryotic Genome Annotation Pipeline☆338Updated this week
- Classifier for metagenomic sequences☆260Updated 7 months ago
- adapter trimmer for Oxford Nanopore reads☆362Updated last year
- Viral genomics analysis pipelines☆194Updated 8 months ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆225Updated 2 years ago
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆242Updated 2 weeks ago
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆312Updated 2 weeks ago
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆369Updated last month
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆232Updated 4 years ago
- An overview of all nanopack tools☆254Updated 2 years ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆342Updated this week
- Read alignment statistics for metagenomics☆346Updated last week
- Gene cluster comparison figure generator☆578Updated 6 months ago
- Read-based phasing of genomic variants, also called haplotype assembly☆369Updated last week
- BWK awk modified for biological data☆621Updated 2 years ago
- GenomeTools genome analysis system.☆311Updated last year
- Rapid comparison and dereplication of genomes☆295Updated last month
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference database☆281Updated last month
- Plotting scripts for long read sequencing data☆477Updated last month
- Pilon is an automated genome assembly improvement and variant detection tool☆363Updated 3 years ago
- Genome Assembly and Annotation Service code☆212Updated last year
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆274Updated 2 years ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆268Updated last year
- A complete pipeline for metagenomic analysis☆416Updated this week
- Official home of genome aligner based upon notion of Cactus graphs☆576Updated last week