veg / SARS-CoV-2Links
Daily analyses of genomic SARS-CoV-2 data
☆14Updated 2 years ago
Alternatives and similar repositories for SARS-CoV-2
Users that are interested in SARS-CoV-2 are comparing it to the libraries listed below
Sorting:
- Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…☆21Updated 2 months ago
- CoV-Seq: COVID-19 Genomic Sequence Database and Visualization☆15Updated 4 years ago
- Course Materials for EN.601.452 / AS.020.415 Computational Biomedical Research & Advanced Biomedical Research☆13Updated 3 years ago
- A Python package for mapping sequence aligned data onto protein structures☆35Updated 4 years ago
- antimicrobial peptide prediction in R☆32Updated 7 months ago
- SARS-CoV-2 RBD antibody escape calculator☆12Updated 7 months ago
- A package for making tree-based visualizations for embedding vectors☆9Updated 2 years ago
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆27Updated 6 months ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated 2 years ago
- Ancestral Sequence Reconstruction in Python☆14Updated 6 years ago
- Python Implementation of Codon Adaption Index☆37Updated 2 years ago
- Code for LazyAF pipeline☆20Updated last year
- A Python3 script for removal of outlier sequences from a multiple sequence alignment (FASTA format).☆9Updated 5 months ago
- Observed substitution counts of SARS-CoV-2 compared to those expected under the mutation rates☆20Updated 8 months ago
- Python framework for doing ancestral sequence reconstruction☆38Updated last year
- Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models☆12Updated 2 years ago
- A platform to do RNA science☆27Updated 4 years ago
- ☆25Updated last year
- The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.☆19Updated last year
- Database of virus RdRP barcode sequences☆16Updated last year
- Natural Product Discovery tools -- a toolkit containing various pipelines for in silico analysis of natural product mass spectrometry da…☆28Updated 2 years ago
- Find common blocks and differences between DNA sequences☆42Updated 3 months ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆29Updated last year
- Open source short linear motif discovery and sequence analysis☆24Updated 9 months ago
- Package that facilitates pulling database entries from KEGG via its REST API☆9Updated last year
- Lecture notes and material for Computational Thinking in Bioinformatics☆8Updated 7 years ago
- ☆41Updated 10 months ago
- Map genetic variants and protein positions to protein interfaces in 3D☆13Updated last year
- Count and compare 16S rRNA genes within a genus☆16Updated 11 months ago
- ☆14Updated 9 years ago