adelq / dndsLinks
Calculate dN/dS ratio precisely (Ka/Ks) using a codon-by-codon counting method.
☆26Updated 7 years ago
Alternatives and similar repositories for dnds
Users that are interested in dnds are comparing it to the libraries listed below
Sorting:
- Tools for detecting DNA modifications from single molecule, real-time sequencing data☆27Updated 3 years ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆46Updated last week
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- SHOOT.bio - the phylogenetic search engine☆27Updated 2 years ago
- ☆68Updated last week
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆69Updated 2 months ago
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆54Updated last year
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆60Updated last year
- a broadly applicable tool for automated gene identification and retrieval☆32Updated last year
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago
- Pangenome analysis of eukaryotes.☆21Updated 5 years ago
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆60Updated 2 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆34Updated last year
- Genome-Genome circle synteny☆25Updated 2 years ago
- Sliding window dN/dS vs. functional protein domain comparison tool. Given VectorBase gene id inputs it will aggregate various useful Bioi…☆19Updated last year
- ☆30Updated last year
- tree visualization for tree + annotation data☆45Updated 7 months ago
- ☆29Updated 4 years ago
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆33Updated 2 years ago
- A versatile toolkit for k-mers with taxonomic information☆82Updated 5 months ago
- Full-length de novo viral haplotype reconstruction from noisy long reads☆21Updated 2 years ago
- Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequenc…☆37Updated 6 months ago
- FastOMA is a scalable software package to infer orthology relationship.☆90Updated last week
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- Federating genomes with love (and synteny derived from functional annotations)☆44Updated 8 months ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆64Updated last week
- perSVade: personalized Structural Variation detection☆40Updated last week
- MIRA sequence assembler☆31Updated last year
- ☆28Updated 5 years ago
- Within-species genome-wide dN/dS estimation from very many genomes☆22Updated 5 years ago