adelq / dndsLinks
Calculate dN/dS ratio precisely (Ka/Ks) using a codon-by-codon counting method.
☆25Updated 7 years ago
Alternatives and similar repositories for dnds
Users that are interested in dnds are comparing it to the libraries listed below
Sorting:
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆68Updated last month
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆41Updated 2 months ago
- Tools for detecting DNA modifications from single molecule, real-time sequencing data☆25Updated 3 years ago
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆59Updated last year
- Python bindings for the TaxonKit library☆41Updated last month
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆52Updated 8 months ago
- ☆31Updated last year
- FastOMA is a scalable software package to infer orthology relationship.☆78Updated last month
- A program for detection of tRNA genes☆64Updated 2 years ago
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago
- SHOOT.bio - the phylogenetic search engine☆25Updated 2 years ago
- ☆28Updated 3 years ago
- MIRA sequence assembler☆29Updated 7 months ago
- ☆27Updated 5 years ago
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆58Updated last year
- In-depth characterization and annotation of differences between two sets of DNA sequences☆61Updated 5 years ago
- Pangenome analysis of eukaryotes.☆18Updated 4 years ago
- Visualize whole genome alignments as linear maps☆73Updated this week
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆50Updated last month
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆33Updated last year
- perSVade: personalized Structural Variation detection☆40Updated last month
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Within-species genome-wide dN/dS estimation from very many genomes☆21Updated 4 years ago
- Tiberius is a deep learning gene finder.☆69Updated this week
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 5 months ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆52Updated 2 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- ☆26Updated 4 years ago
- ☆35Updated 2 years ago
- a broadly applicable tool for automated gene identification and retrieval☆32Updated 8 months ago