adelq / dndsLinks
Calculate dN/dS ratio precisely (Ka/Ks) using a codon-by-codon counting method.
☆26Updated 7 years ago
Alternatives and similar repositories for dnds
Users that are interested in dnds are comparing it to the libraries listed below
Sorting:
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆68Updated 2 weeks ago
- Federating genomes with love (and synteny derived from functional annotations)☆44Updated 7 months ago
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆60Updated last year
- SHOOT.bio - the phylogenetic search engine☆27Updated 2 years ago
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆53Updated last year
- perSVade: personalized Structural Variation detection☆40Updated 3 months ago
- Tools for detecting DNA modifications from single molecule, real-time sequencing data☆26Updated 3 years ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆44Updated 4 months ago
- A versatile toolkit for k-mers with taxonomic information☆81Updated 3 months ago
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆60Updated 2 years ago
- ☆30Updated last year
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆55Updated 4 months ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆35Updated last year
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- a broadly applicable tool for automated gene identification and retrieval☆32Updated last year
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 2 months ago
- Pangenome analysis of eukaryotes.☆20Updated 5 years ago
- MIRA sequence assembler☆30Updated 11 months ago
- orthology assignment using phylogenetic and network analyses☆49Updated last month
- ☆39Updated 2 years ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- ☆29Updated 4 years ago
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆33Updated 2 years ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- STAG: Species Tree from All Genes☆34Updated 7 years ago
- tools for assessing the accuracy of genome assemblies☆35Updated last year
- Convert genbank files to a swath of other formats☆24Updated 2 years ago
- Visualize whole genome alignments as linear maps☆74Updated 4 months ago