R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.
☆21Mar 5, 2023Updated 3 years ago
Alternatives and similar repositories for R-outbreak-info
Users that are interested in R-outbreak-info are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SARS-CoV-2 genome data analysis☆10Dec 6, 2025Updated 7 months ago
- A package containing several useful R-functions for reading and plotting the results of Birth-Death Skyline (BDSKY) runs in BEAST2.☆12Nov 28, 2018Updated 7 years ago
- Import script needed to build FluPRINT database from source☆11May 23, 2019Updated 7 years ago
- ☆22Mar 5, 2025Updated last year
- The data API server for outbreak.info☆11Jan 27, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- CRAN Task View: Epidemiology☆23Jun 6, 2026Updated last month
- Quantitative data about how much SARS-CoV2 virus is found in New Zealand's wastewater☆22Jul 19, 2026Updated last week
- R package for studying phylogenetically-informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al. 2026, Bioinformatics)☆43Mar 24, 2026Updated 4 months ago
- Variant abundance estimation for SARS-CoV-2 in wastewater using RNA-Seq quantification☆15Sep 27, 2023Updated 2 years ago
- Assists in making queries to CDC Wonder API☆29May 28, 2026Updated 2 months ago
- Scenario-based health impact projections of the war in Gaza (2023-2024)☆24Jan 26, 2026Updated 6 months ago
- Racmacs R package for performing antigenic cartography☆24Jul 8, 2026Updated 3 weeks ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics☆20Jan 13, 2019Updated 7 years ago
- ☆18Jan 29, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- The Genomic Epidemiology Application Ontology describes the genomics, laboratory, clinical and epidemiological contextual information req…☆25Jul 11, 2026Updated 2 weeks ago
- ☆19Nov 24, 2025Updated 8 months ago
- Simple scripts for concatenate alignments and rename terminals for phylogenetics☆22Sep 20, 2022Updated 3 years ago
- R tools for posterior analyses using BEAST☆20Apr 10, 2019Updated 7 years ago
- B-cell repertoire and clonal family tree explorer☆18Updated this week
- GCtree: phylogenetic inference of genotype-collapsed trees☆18Aug 27, 2024Updated last year
- ☆11Dec 31, 2021Updated 4 years ago
- Tools for processing immunosequencing data☆11Apr 9, 2026Updated 3 months ago
- Summarise nucleotide counts at a set of positions in a BAM file to search for mixtures☆13Apr 5, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Model-based time series clustering using variational inference.☆12Oct 28, 2018Updated 7 years ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3☆19Jun 26, 2026Updated last month
- 📊 📄 Suparna Chaudhry, Marc Dotson, and Andrew Heiss, "Who Cares About Crackdowns? Exploring the Role of Trust in Individual Philanthrop…☆27May 14, 2021Updated 5 years ago
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Nov 10, 2023Updated 2 years ago
- This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees☆16Jan 9, 2019Updated 7 years ago
- Pyro models of SARS-CoV-2 variants☆80Jul 26, 2024Updated 2 years ago
- Scalable relaxed clock phylogenetic dating☆29Jul 5, 2026Updated 3 weeks ago
- A R statistical software package for estimating attributable influenza morbidity & mortality☆14Jun 6, 2019Updated 7 years ago
- Analysis of global migration patterns of seasonal influenza viruses☆22Jul 24, 2019Updated 7 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Deep learning model to predict degron sequences☆19Feb 24, 2023Updated 3 years ago
- Repository for Global.health: a data science initiative to enable rapid sharing of trusted and open public health data to advance the res…☆41Updated this week
- A repo with supplementary material for a manuscript on the origin of SARS-CoV-2 origins☆11Jun 26, 2020Updated 6 years ago
- Collection of datasets for network research.☆16Jul 26, 2020Updated 6 years ago
- DeepNovo workflow of neoantigen discovery by personalized de novo sequencing.☆12Nov 26, 2020Updated 5 years ago
- Umbrella documentation project for Nextstrain☆18Jul 15, 2026Updated 2 weeks ago
- Use a nested folder structure in your package.☆18May 9, 2025Updated last year