outbreak-info / R-outbreak-info
R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.
☆20Updated last year
Alternatives and similar repositories for R-outbreak-info:
Users that are interested in R-outbreak-info are comparing it to the libraries listed below
- Molecular Epidemiology of Viruses in R☆19Updated 9 years ago
- Racmacs R package for performing antigenic cartography☆20Updated 7 months ago
- Analysis of global migration patterns of seasonal influenza viruses☆22Updated 5 years ago
- Disease outbreak reconstruction from epidemiological and genetic data☆31Updated 4 months ago
- ☆19Updated 2 weeks ago
- Utilities and distributions for (birth-death) skyline models.☆10Updated 5 years ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3☆13Updated last year
- ☆13Updated last month
- Tool for visualising viral lineages in space and time. As seen on covid19.sanger.ac.uk and covglobe.org.☆10Updated 2 years ago
- R package for studying environmental rasters and phylogenetic informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al.…☆30Updated last week
- Reconstruction of transmission trees using genomic data☆61Updated last year
- Programmatically interact with the GISAID database.☆73Updated 4 months ago
- Coalescent simulation and likelihood for phylodynamic inference☆13Updated last month
- ☆15Updated last week
- Scalable relaxed clock phylogenetic dating☆24Updated 10 months ago
- Inferring spatiotemporal dynamics of H5N1 influenza from sequence data☆10Updated 11 years ago
- Source files for online resources of Bioinformatics of Infectious Diseases course☆21Updated 4 years ago
- A Toolbox for Manipulating Biological Sequences in R☆22Updated 2 years ago
- Estimate growth rate advantage of SARS-CoV2 variants of concern based on international genomic surveillance data and multinomial spline f…☆25Updated last year
- Welcome to the StrainHub Repo - Files and Data - StrainHub Online:☆16Updated 2 years ago
- Seamless Integration of BLAST Sequence Searches in R☆31Updated last year
- R We There Yet?☆30Updated 2 years ago
- Species richness with high diversity☆68Updated last year
- Analysis of Phylogenetics and Evolution☆58Updated last month
- Pathogen evolution, selection and immunity☆46Updated 10 months ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics☆20Updated 6 years ago
- R tools for posterior analyses using BEAST☆20Updated 5 years ago
- Phylodynamic inference☆18Updated 4 years ago
- Cluster Investigation & Virus Epidemiology Tool☆50Updated 2 years ago
- A Tidy Tool for Phylogenetic Tree Data Manipulation☆54Updated 6 months ago