outbreak-info / R-outbreak-info
R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.
☆20Updated last year
Alternatives and similar repositories for R-outbreak-info:
Users that are interested in R-outbreak-info are comparing it to the libraries listed below
- Molecular Epidemiology of Viruses in R☆19Updated 9 years ago
- Disease outbreak reconstruction from epidemiological and genetic data☆31Updated 5 months ago
- Analysis of global migration patterns of seasonal influenza viruses☆22Updated 5 years ago
- Racmacs R package for performing antigenic cartography☆21Updated 8 months ago
- STAMPS 2018 course☆16Updated 6 years ago
- ☆19Updated last month
- Tool for visualising viral lineages in space and time. As seen on covid19.sanger.ac.uk and covglobe.org.☆10Updated 2 years ago
- ☆13Updated 3 months ago
- ☆19Updated last year
- Welcome to the StrainHub Repo - Files and Data - StrainHub Online:☆16Updated 2 years ago
- Reconstruction of transmission trees using genomic data☆61Updated last year
- PhyDyn: Epidemiological modelling in BEAST☆22Updated 2 years ago
- Source files for online resources of Bioinformatics of Infectious Diseases course☆21Updated 4 years ago
- A Toolbox for Manipulating Biological Sequences in R☆22Updated 2 years ago
- ☆18Updated last year
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3☆14Updated last year
- This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees☆15Updated 6 years ago
- Scalable relaxed clock phylogenetic dating☆24Updated 11 months ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics☆20Updated 6 years ago
- R tools for posterior analyses using BEAST☆20Updated 5 years ago
- An Amazing Shiny App☆17Updated 3 years ago
- Cluster Investigation & Virus Epidemiology Tool☆50Updated 2 years ago
- Phylodynamic inference☆18Updated 4 years ago
- Inferring spatiotemporal dynamics of H5N1 influenza from sequence data☆10Updated 11 years ago
- A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.☆12Updated last year
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated last week
- Metagenomics calibration R package☆18Updated 3 years ago
- Fit LOg-RAtio Lasso regression for compositional covariates☆12Updated 2 weeks ago
- ☆20Updated 2 months ago
- Simple R utilities for working with HMMER☆18Updated 5 months ago