outbreak-info / R-outbreak-info
R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.
☆20Updated 2 years ago
Alternatives and similar repositories for R-outbreak-info:
Users that are interested in R-outbreak-info are comparing it to the libraries listed below
- Analysis of global migration patterns of seasonal influenza viruses☆22Updated 5 years ago
- Molecular Epidemiology of Viruses in R☆19Updated 9 years ago
- Disease outbreak reconstruction from epidemiological and genetic data☆31Updated 6 months ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics☆20Updated 6 years ago
- Racmacs R package for performing antigenic cartography☆21Updated 9 months ago
- ☆19Updated 2 months ago
- Tool for visualising viral lineages in space and time. As seen on covid19.sanger.ac.uk and covglobe.org.☆10Updated 2 years ago
- Reconstruction of transmission trees using genomic data☆62Updated last year
- STAMPS 2018 course☆16Updated 6 years ago
- Source files for online resources of Bioinformatics of Infectious Diseases course☆21Updated 4 years ago
- R tools for posterior analyses using BEAST☆20Updated 5 years ago
- An Amazing Shiny App☆17Updated 3 years ago
- Scalable relaxed clock phylogenetic dating☆24Updated last year
- Coalescent simulation and likelihood for phylodynamic inference☆14Updated last month
- This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees☆15Updated 6 years ago
- A Toolbox for Manipulating Biological Sequences in R☆22Updated 2 years ago
- R package for studying environmental rasters and phylogenetic informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al.…☆33Updated last month
- Seamless Integration of BLAST Sequence Searches in R☆31Updated last year
- ☆19Updated last year
- PhyDyn: Epidemiological modelling in BEAST☆22Updated 2 years ago
- ☆17Updated last month
- Phylodynamic inference☆18Updated 4 years ago
- Utilities and distributions for (birth-death) skyline models.☆10Updated 5 years ago
- Pathogen evolution, selection and immunity☆46Updated last year
- R We There Yet?☆30Updated last week
- A Tidy Tool for Phylogenetic Tree Data Manipulation☆56Updated 8 months ago
- ☆20Updated 3 months ago
- Basic Tools for the Analysis of Disease Outbreaks☆12Updated 5 years ago
- Estimate growth rate advantage of SARS-CoV2 variants of concern based on international genomic surveillance data and multinomial spline f…☆25Updated last year
- K-mer Counting for Biological Sequence Analysis☆27Updated 5 years ago