outbreak-info / outbreak.apiLinks
The data API server for outbreak.info
☆11Updated last year
Alternatives and similar repositories for outbreak.api
Users that are interested in outbreak.api are comparing it to the libraries listed below
Sorting:
- Pathogen evolution, selection and immunity☆45Updated last year
- ☆19Updated 4 years ago
- R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.☆21Updated 2 years ago
- Basic Tools for the Analysis of Disease Outbreaks☆12Updated 6 years ago
- Tools for evolutionary forecasting☆14Updated this week
- A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV…☆37Updated this week
- Estimate growth rate advantage of SARS-CoV2 variants of concern based on international genomic surveillance data and multinomial spline f…☆25Updated 2 years ago
- Tool for visualising viral lineages in space and time. As seen on covid19.sanger.ac.uk and covglobe.org.☆10Updated 3 years ago
- Disease outbreak reconstruction from epidemiological and genetic data☆35Updated last month
- Racmacs R package for performing antigenic cartography☆24Updated last year
- Coalescent simulation and likelihood for phylodynamic inference☆14Updated 8 months ago
- Analysis of EBOV genome sequence from Guinea, Sierra Leone and Liberia from 2014-2016☆61Updated 7 years ago
- Molecular Epidemiology of Viruses in R☆19Updated 10 years ago
- Phylogenetic inference using Stan☆23Updated 11 months ago
- A repo hosting the combined lectures of a course on Fundamentals of Computational Biology☆14Updated 2 years ago
- Estimating time trees from very large phylogenies☆28Updated last year
- Inference framework for serological data☆19Updated last week
- Cleaning up Conda r-packages☆50Updated last month
- Analysis of global migration patterns of seasonal influenza viruses☆22Updated 6 years ago
- Materials for Module 2 of the SISBID Workshop, Visualization of Biomedical Big Data☆26Updated 8 years ago
- Computes affinity between two entities based on their co-occurrence☆29Updated last week
- Gene network analysis☆19Updated 3 years ago
- Resources for Influenza Research☆23Updated 3 years ago
- A web platform to detect and analyze variants of SARS-CoV-2☆61Updated 3 weeks ago
- ☆27Updated 4 years ago
- computational training at Fred Hutch☆12Updated 4 years ago
- K-mer Counting for Biological Sequence Analysis☆28Updated 2 weeks ago
- R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2☆13Updated 2 months ago
- ☆52Updated 6 months ago
- Intro to R and RStudio for Genomics☆30Updated this week